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RPLP2 (ribosomal protein lateral stalk subunit P2)

Identity

Alias_namesD11S2243E
ribosomal protein
Alias_symbol (synonym)P2
RPP2
MGC71408
LP2
Other alias
HGNC (Hugo) RPLP2
LocusID (NCBI) 6181
Atlas_Id 43723
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 809936 and ends at 812876 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LTA4H (12q23.1) / RPLP2 (11p15.5)NFYC (1p34.2) / RPLP2 (11p15.5)RPLP2 (11p15.5) / ACPP (3q22.1)
RPLP2 (11p15.5) / BOD1L1 (4p15.33)RPLP2 (11p15.5) / CALR (19p13.2)RPLP2 (11p15.5) / HBB (11p15.4)
RPLP2 (11p15.5) / HLA-DPA1 (6p21.32)RPLP2 (11p15.5) / HMGB1P5 ()RPLP2 (11p15.5) / LOC100507412 (-)
RPLP2 (11p15.5) / LRRC32 (11q13.5)RPLP2 (11p15.5) / MED15 (22q11.21)RPLP2 (11p15.5) / MNDA (1q23.1)
RPLP2 (11p15.5) / PEG10 (7q21.3)RPLP2 (11p15.5) / RPLP2 (11p15.5)RPLP2 (11p15.5) / RPN1 (3q21.3)
RPLP2 (11p15.5) / TALDO1 (11p15.5)TGFBRAP1 (2q12.1) / RPLP2 (11p15.5)RPLP2 11p15.5 / ACPP 3q22.1
RPLP2 11p15.5 / TALDO1 11p15.5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPLP2   10377
Cards
Entrez_Gene (NCBI)RPLP2  6181  ribosomal protein lateral stalk subunit P2
AliasesD11S2243E; LP2; P2; RPP2
GeneCards (Weizmann)RPLP2
Ensembl hg19 (Hinxton)ENSG00000177600 [Gene_View]  chr11:809936-812876 [Contig_View]  RPLP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177600 [Gene_View]  chr11:809936-812876 [Contig_View]  RPLP2 [Vega]
ICGC DataPortalENSG00000177600
TCGA cBioPortalRPLP2
AceView (NCBI)RPLP2
Genatlas (Paris)RPLP2
WikiGenes6181
SOURCE (Princeton)RPLP2
Genetics Home Reference (NIH)RPLP2
Genomic and cartography
GoldenPath hg19 (UCSC)RPLP2  -     chr11:809936-812876 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPLP2  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblRPLP2 - 11p15.5 [CytoView hg19]  RPLP2 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIRPLP2 [Mapview hg19]  RPLP2 [Mapview hg38]
OMIM180530   
Gene and transcription
Genbank (Entrez)AK130959 AK311954 BC005354 BC005920 BC007573
RefSeq transcript (Entrez)NM_001004
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)RPLP2
Cluster EST : UnigeneHs.437594 [ NCBI ]
CGAP (NCI)Hs.437594
Alternative Splicing GalleryENSG00000177600
Gene ExpressionRPLP2 [ NCBI-GEO ]   RPLP2 [ EBI - ARRAY_EXPRESS ]   RPLP2 [ SEEK ]   RPLP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPLP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6181
GTEX Portal (Tissue expression)RPLP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05387   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05387  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05387
Splice isoforms : SwissVarP05387
PhosPhoSitePlusP05387
Domains : Interpro (EBI)Ribosomal_L12   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPLP2
DMDM Disease mutations6181
Blocks (Seattle)RPLP2
PDB (SRS)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
PDB (PDBSum)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
PDB (IMB)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
PDB (RSDB)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
Structural Biology KnowledgeBase1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
SCOP (Structural Classification of Proteins)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
CATH (Classification of proteins structures)1S4J    2JDL    2LBF    2W1O    4BEH    4V6X   
SuperfamilyP05387
Human Protein AtlasENSG00000177600
Peptide AtlasP05387
HPRD01612
IPIIPI00008529   IPI00981000   
Protein Interaction databases
DIP (DOE-UCLA)P05387
IntAct (EBI)P05387
FunCoupENSG00000177600
BioGRIDRPLP2
STRING (EMBL)RPLP2
ZODIACRPLP2
Ontologies - Pathways
QuickGOP05387
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  focal adhesion  rRNA processing  translation  translational initiation  translational elongation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  preribosome, large subunit precursor  extracellular exosome  large ribosomal subunit rRNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  focal adhesion  rRNA processing  translation  translational initiation  translational elongation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  preribosome, large subunit precursor  extracellular exosome  large ribosomal subunit rRNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPLP2
Atlas of Cancer Signalling NetworkRPLP2
Wikipedia pathwaysRPLP2
Orthology - Evolution
OrthoDB6181
GeneTree (enSembl)ENSG00000177600
Phylogenetic Trees/Animal Genes : TreeFamRPLP2
HOVERGENP05387
HOGENOMP05387
Homologs : HomoloGeneRPLP2
Homology/Alignments : Family Browser (UCSC)RPLP2
Gene fusions - Rearrangements
Fusion : MitelmanRPLP2/ACPP [11p15.5/3q22.1]  
Fusion : MitelmanRPLP2/TALDO1 [11p15.5/11p15.5]  [t(11;11)(p15;p15)]  
Fusion: TCGARPLP2 11p15.5 ACPP 3q22.1 PRAD
Fusion: TCGARPLP2 11p15.5 TALDO1 11p15.5 LUAD
Fusion Cancer (Beijing)RPLP2 [11p15.5]  -  HMGB1P5 [-]  [FUSC001096]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPLP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPLP2
dbVarRPLP2
ClinVarRPLP2
1000_GenomesRPLP2 
Exome Variant ServerRPLP2
ExAC (Exome Aggregation Consortium)RPLP2 (select the gene name)
Genetic variants : HAPMAP6181
Genomic Variants (DGV)RPLP2 [DGVbeta]
DECIPHER (Syndromes)11:809936-812876  ENSG00000177600
CONAN: Copy Number AnalysisRPLP2 
Mutations
ICGC Data PortalRPLP2 
TCGA Data PortalRPLP2 
Broad Tumor PortalRPLP2
OASIS PortalRPLP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPLP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPLP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPLP2
DgiDB (Drug Gene Interaction Database)RPLP2
DoCM (Curated mutations)RPLP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPLP2 (select a term)
intoGenRPLP2
Cancer3DRPLP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180530   
Orphanet
MedgenRPLP2
Genetic Testing Registry RPLP2
NextProtP05387 [Medical]
TSGene6181
GENETestsRPLP2
Huge Navigator RPLP2 [HugePedia]
snp3D : Map Gene to Disease6181
BioCentury BCIQRPLP2
ClinGenRPLP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6181
Chemical/Pharm GKB GenePA34776
Clinical trialRPLP2
Miscellaneous
canSAR (ICR)RPLP2 (select the gene name)
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPLP2
EVEXRPLP2
GoPubMedRPLP2
iHOPRPLP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:40 CET 2017

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