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RPN1 (ribophorin I)

Identity

Other namesOST1
RBPH1
HGNC (Hugo) RPN1
LocusID (NCBI) 6184
Location 3q21.3
Location_base_pair Starts at 128338813 and ends at 128369719 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)RPN1   10381
Entrez_Gene (NCBI)RPN1  6184  ribophorin I
Cards
GeneCards (Weizmann)RPN1
Ensembl (Hinxton)ENSG00000163902 [Gene_View]  chr3:128338813-128369719 [Contig_View]  RPN1 [Vega]
AceView (NCBI)RPN1
Genatlas (Paris)RPN1
SOURCE (Stanford)NM_002950
Genomic and cartography
GoldenPath (UCSC)RPN1  -  3q21.3   chr3:128338813-128369719 -  3q21.3   [Description]    (hg19-Feb_2009)
EnsemblRPN1 - 3q21.3 [CytoView]
Mapping of homologs : NCBIRPN1 [Mapview]
OMIM180470   
Gene and transcription
Genbank (Entrez)AK223595 AK296905 AK297513 AK297941 AK312369
RefSeq transcript (SRS)NM_002950
RefSeq transcript (Entrez)NM_002950
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838883 NW_004078013
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838883 NW_004078013
Consensus coding sequences : CCDS (NCBI)RPN1
Cluster EST : UnigeneHs.603636 [ SRS ] Hs.603636 [ NCBI ]
CGAP (NCI)Hs.603636
Alternative Splicing : Fast-db (Paris)GSHG0022038
Alternative Splicing GalleryENSG00000163902
Gene ExpressionRPN1 [ NCBI-GEO ]   RPN1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04843 (SRS) P04843 (Uniprot)
NextProtP04843
With graphics : InterProP04843
Splice isoforms : SwissVarP04843(Swissvar)
Domains : Interpro (SRS)Ribophorin_I   
Domains : Interpro (EBI)Ribophorin_I   
Related proteins : CluSTrP04843
Domain families : Pfam (SRS)Ribophorin_I (PF04597)   
Domain families : Pfam (Sanger)Ribophorin_I (PF04597)   
Domain families : Pfam (NCBI)pfam04597   
DMDM6184
Blocks (Seattle)P04843
Human Protein AtlasENSG00000163902
HPRD01598
IPIIPI00793589   IPI01015265   IPI00025874   IPI01011639   IPI00945851   
Protein Interaction databases
DIP (DOE-UCLA)P04843
IntAct (EBI)P04843
FunCoupENSG00000163902
REACTOMERPN1
Protein Interaction Database6184
BioGRIDRPN1
InParanoidP04843
Interologous Interaction database P04843
IntegromeDBRPN1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPN1
SNP (GeneSNP Utah)RPN1
SNP : HGBaseRPN1
Genetic variants : HAPMAPRPN1
Cancer Gene: CensusRPN1 
Somatic Mutations in Cancer : COSMICRPN1 
CONAN: Copy Number AnalysisRPN1 
Translocation Breakpoints in Cancer : TICdbRPN1 
Mutations and Diseases : HGMDRPN1
OMIM180470   
GENETests180470   
Disease Genetic AssociationRPN1
Huge Navigator RPN1 [HugePedia]  RPN1 [HugeCancerGEM]
Genomic VariantsRPN1  RPN1 [DGVbeta]
ClinVarRPN1
snp3D : Map Gene to Disease6184
General knowledge
Homologs : HomoloGeneRPN1
Homology/Alignments : Family Browser (UCSC)RPN1
Phylogenetic Trees/Animal Genes : TreeFamRPN1
Catalytic activity : Enzyme2.4.1.119 [ Enzyme-Expasy ]   2.4.1.119 [ Enzyme-SRS ]   2.4.1.119 [ IntEnz-EBI ]   2.4.1.119 [ BRENDA ]   2.4.1.119 [ KEGG ]   
Chemical/Protein Interactions : CTD6184
Chemical/Pharm GKB GenePA34777
Clinical trialRPN1
Cancer Resource (Charite)ENSG00000163902
Ontology : AmiGOdolichyl-diphosphooligosaccharide-protein glycotransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  rough endoplasmic reticulum  translation  cellular protein modification process  SRP-dependent cotranslational protein targeting to membrane  oligosaccharyltransferase complex  gene expression  integral to membrane  protein N-linked glycosylation via asparagine  melanosome  post-translational protein modification  cellular protein metabolic process  
Ontology : EGO-EBIdolichyl-diphosphooligosaccharide-protein glycotransferase activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  rough endoplasmic reticulum  translation  cellular protein modification process  SRP-dependent cotranslational protein targeting to membrane  oligosaccharyltransferase complex  gene expression  integral to membrane  protein N-linked glycosylation via asparagine  melanosome  post-translational protein modification  cellular protein metabolic process  
Pathways : KEGGN-Glycan biosynthesisGlycan structures - biosynthesis 1
Other databases
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
PubGeneRPN1
iHOPRPN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:42:05 CEST 2013
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