Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPP25L (ribonuclease P/MRP 25kDa subunit-like)

Identity

Alias_namesC9orf23
chromosome 9 open reading frame 23
ribonuclease P/MRP 25kDa subunit-like
Alias_symbol (synonym)bA296L22.5
MGC29635
Other alias
HGNC (Hugo) RPP25L
LocusID (NCBI) 138716
Atlas_Id 72844
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34610482 and ends at 34612110 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPP25L   19909
Cards
Entrez_Gene (NCBI)RPP25L  138716  ribonuclease P/MRP 25kDa subunit-like
AliasesC9orf23; bA296L22.5
GeneCards (Weizmann)RPP25L
Ensembl hg19 (Hinxton)ENSG00000164967 [Gene_View]  chr9:34610482-34612110 [Contig_View]  RPP25L [Vega]
Ensembl hg38 (Hinxton)ENSG00000164967 [Gene_View]  chr9:34610482-34612110 [Contig_View]  RPP25L [Vega]
ICGC DataPortalENSG00000164967
TCGA cBioPortalRPP25L
AceView (NCBI)RPP25L
Genatlas (Paris)RPP25L
WikiGenes138716
SOURCE (Princeton)RPP25L
Genetics Home Reference (NIH)RPP25L
Genomic and cartography
GoldenPath hg19 (UCSC)RPP25L  -     chr9:34610482-34612110 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPP25L  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblRPP25L - 9p13.3 [CytoView hg19]  RPP25L - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIRPP25L [Mapview hg19]  RPP25L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI016726 AL528391 BC032136 BQ021160 BQ224958
RefSeq transcript (Entrez)NM_148178 NM_148179
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)RPP25L
Cluster EST : UnigeneHs.15961 [ NCBI ]
CGAP (NCI)Hs.15961
Alternative Splicing GalleryENSG00000164967
Gene ExpressionRPP25L [ NCBI-GEO ]   RPP25L [ EBI - ARRAY_EXPRESS ]   RPP25L [ SEEK ]   RPP25L [ MEM ]
Gene Expression Viewer (FireBrowse)RPP25L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138716
GTEX Portal (Tissue expression)RPP25L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5L8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5L8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5L8
Splice isoforms : SwissVarQ8N5L8
PhosPhoSitePlusQ8N5L8
Domains : Interpro (EBI)DNA/RNA-bd_Alba-like   
Domain families : Pfam (Sanger)Alba (PF01918)   
Domain families : Pfam (NCBI)pfam01918   
Conserved Domain (NCBI)RPP25L
DMDM Disease mutations138716
Blocks (Seattle)RPP25L
SuperfamilyQ8N5L8
Human Protein AtlasENSG00000164967
Peptide AtlasQ8N5L8
HPRD12948
IPIIPI00166873   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5L8
IntAct (EBI)Q8N5L8
FunCoupENSG00000164967
BioGRIDRPP25L
STRING (EMBL)RPP25L
ZODIACRPP25L
Ontologies - Pathways
QuickGOQ8N5L8
Ontology : AmiGOprotein binding  nucleus  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  nucleus  poly(A) RNA binding  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkRPP25L
Atlas of Cancer Signalling NetworkRPP25L
Wikipedia pathwaysRPP25L
Orthology - Evolution
OrthoDB138716
GeneTree (enSembl)ENSG00000164967
Phylogenetic Trees/Animal Genes : TreeFamRPP25L
HOVERGENQ8N5L8
HOGENOMQ8N5L8
Homologs : HomoloGeneRPP25L
Homology/Alignments : Family Browser (UCSC)RPP25L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPP25L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPP25L
dbVarRPP25L
ClinVarRPP25L
1000_GenomesRPP25L 
Exome Variant ServerRPP25L
ExAC (Exome Aggregation Consortium)RPP25L (select the gene name)
Genetic variants : HAPMAP138716
Genomic Variants (DGV)RPP25L [DGVbeta]
DECIPHER (Syndromes)9:34610482-34612110  ENSG00000164967
CONAN: Copy Number AnalysisRPP25L 
Mutations
ICGC Data PortalRPP25L 
TCGA Data PortalRPP25L 
Broad Tumor PortalRPP25L
OASIS PortalRPP25L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPP25L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPP25L
DgiDB (Drug Gene Interaction Database)RPP25L
DoCM (Curated mutations)RPP25L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPP25L (select a term)
intoGenRPP25L
Cancer3DRPP25L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPP25L
Genetic Testing Registry RPP25L
NextProtQ8N5L8 [Medical]
TSGene138716
GENETestsRPP25L
Huge Navigator RPP25L [HugePedia]
snp3D : Map Gene to Disease138716
BioCentury BCIQRPP25L
ClinGenRPP25L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138716
Chemical/Pharm GKB GenePA134989644
Clinical trialRPP25L
Miscellaneous
canSAR (ICR)RPP25L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPP25L
EVEXRPP25L
GoPubMedRPP25L
iHOPRPP25L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:49 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.