Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPP30 (ribonuclease P/MRP 30kDa subunit)

Identity

Alias_namesribonuclease P/MRP 30kDa subunit
Alias_symbol (synonym)TSG15
Other alias
HGNC (Hugo) RPP30
LocusID (NCBI) 10556
Atlas_Id 72845
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 92631709 and ends at 92668312 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPP30 (10q23.31) / RPP30 (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPP30   17688
Cards
Entrez_Gene (NCBI)RPP30  10556  ribonuclease P/MRP 30kDa subunit
AliasesTSG15
GeneCards (Weizmann)RPP30
Ensembl hg19 (Hinxton)ENSG00000148688 [Gene_View]  chr10:92631709-92668312 [Contig_View]  RPP30 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148688 [Gene_View]  chr10:92631709-92668312 [Contig_View]  RPP30 [Vega]
ICGC DataPortalENSG00000148688
TCGA cBioPortalRPP30
AceView (NCBI)RPP30
Genatlas (Paris)RPP30
WikiGenes10556
SOURCE (Princeton)RPP30
Genetics Home Reference (NIH)RPP30
Genomic and cartography
GoldenPath hg19 (UCSC)RPP30  -     chr10:92631709-92668312 +  10q23.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPP30  -     10q23.31   [Description]    (hg38-Dec_2013)
EnsemblRPP30 - 10q23.31 [CytoView hg19]  RPP30 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIRPP30 [Mapview hg19]  RPP30 [Mapview hg38]
OMIM606115   
Gene and transcription
Genbank (Entrez)AK095810 AK225532 AK296196 AK312900 AL833628
RefSeq transcript (Entrez)NM_001104546 NM_006413
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)RPP30
Cluster EST : UnigeneHs.139120 [ NCBI ]
CGAP (NCI)Hs.139120
Alternative Splicing GalleryENSG00000148688
Gene ExpressionRPP30 [ NCBI-GEO ]   RPP30 [ EBI - ARRAY_EXPRESS ]   RPP30 [ SEEK ]   RPP30 [ MEM ]
Gene Expression Viewer (FireBrowse)RPP30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10556
GTEX Portal (Tissue expression)RPP30
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78346   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78346  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78346
Splice isoforms : SwissVarP78346
Catalytic activity : Enzyme3.1.26.5 [ Enzyme-Expasy ]   3.1.26.53.1.26.5 [ IntEnz-EBI ]   3.1.26.5 [ BRENDA ]   3.1.26.5 [ KEGG ]   
PhosPhoSitePlusP78346
Domains : Interpro (EBI)Pol/histidinol_Pase-like    RNase_P_p30   
Domain families : Pfam (Sanger)RNase_P_p30 (PF01876)   
Domain families : Pfam (NCBI)pfam01876   
Conserved Domain (NCBI)RPP30
DMDM Disease mutations10556
Blocks (Seattle)RPP30
SuperfamilyP78346
Human Protein AtlasENSG00000148688
Peptide AtlasP78346
HPRD09359
IPIIPI00019196   IPI00941057   IPI00478229   IPI00876864   IPI00641692   
Protein Interaction databases
DIP (DOE-UCLA)P78346
IntAct (EBI)P78346
FunCoupENSG00000148688
BioGRIDRPP30
STRING (EMBL)RPP30
ZODIACRPP30
Ontologies - Pathways
QuickGOP78346
Ontology : AmiGOribonuclease P activity  protein binding  nucleus  nucleolar ribonuclease P complex  tRNA processing  poly(A) RNA binding  RNA phosphodiester bond hydrolysis  RNA phosphodiester bond hydrolysis, endonucleolytic  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIribonuclease P activity  protein binding  nucleus  nucleolar ribonuclease P complex  tRNA processing  poly(A) RNA binding  RNA phosphodiester bond hydrolysis  RNA phosphodiester bond hydrolysis, endonucleolytic  RNA phosphodiester bond hydrolysis, endonucleolytic  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkRPP30
Atlas of Cancer Signalling NetworkRPP30
Wikipedia pathwaysRPP30
Orthology - Evolution
OrthoDB10556
GeneTree (enSembl)ENSG00000148688
Phylogenetic Trees/Animal Genes : TreeFamRPP30
HOVERGENP78346
HOGENOMP78346
Homologs : HomoloGeneRPP30
Homology/Alignments : Family Browser (UCSC)RPP30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPP30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPP30
dbVarRPP30
ClinVarRPP30
1000_GenomesRPP30 
Exome Variant ServerRPP30
ExAC (Exome Aggregation Consortium)RPP30 (select the gene name)
Genetic variants : HAPMAP10556
Genomic Variants (DGV)RPP30 [DGVbeta]
DECIPHER (Syndromes)10:92631709-92668312  ENSG00000148688
CONAN: Copy Number AnalysisRPP30 
Mutations
ICGC Data PortalRPP30 
TCGA Data PortalRPP30 
Broad Tumor PortalRPP30
OASIS PortalRPP30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPP30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPP30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPP30
DgiDB (Drug Gene Interaction Database)RPP30
DoCM (Curated mutations)RPP30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPP30 (select a term)
intoGenRPP30
Cancer3DRPP30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606115   
Orphanet
MedgenRPP30
Genetic Testing Registry RPP30
NextProtP78346 [Medical]
TSGene10556
GENETestsRPP30
Huge Navigator RPP30 [HugePedia]
snp3D : Map Gene to Disease10556
BioCentury BCIQRPP30
ClinGenRPP30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10556
Chemical/Pharm GKB GenePA134876345
Clinical trialRPP30
Miscellaneous
canSAR (ICR)RPP30 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPP30
EVEXRPP30
GoPubMedRPP30
iHOPRPP30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:49 CET 2017

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