Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RPP30 (ribonuclease P/MRP subunit p30)

Identity

Alias (NCBI)TSG15
HGNC (Hugo) RPP30
HGNC Alias symbTSG15
HGNC Alias nameribonuclease P protein subunit p30
HGNC Previous nameribonuclease P/MRP 30kDa subunit
LocusID (NCBI) 10556
Atlas_Id 72845
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 90871952 and ends at 90902190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPP30 (10q23.31) / RPP30 (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPP30   17688
Cards
Entrez_Gene (NCBI)RPP30    ribonuclease P/MRP subunit p30
AliasesTSG15
GeneCards (Weizmann)RPP30
Ensembl hg19 (Hinxton)ENSG00000148688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148688 [Gene_View]  ENSG00000148688 [Sequence]  chr10:90871952-90902190 [Contig_View]  RPP30 [Vega]
ICGC DataPortalENSG00000148688
TCGA cBioPortalRPP30
AceView (NCBI)RPP30
Genatlas (Paris)RPP30
SOURCE (Princeton)RPP30
Genetics Home Reference (NIH)RPP30
Genomic and cartography
GoldenPath hg38 (UCSC)RPP30  -     chr10:90871952-90902190 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPP30  -     10q23.31   [Description]    (hg19-Feb_2009)
GoldenPathRPP30 - 10q23.31 [CytoView hg19]  RPP30 - 10q23.31 [CytoView hg38]
ImmunoBaseENSG00000148688
genome Data Viewer NCBIRPP30 [Mapview hg19]  
OMIM606115   
Gene and transcription
Genbank (Entrez)AK095810 AK225532 AK296196 AK312900 AL833628
RefSeq transcript (Entrez)NM_001104546 NM_006413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPP30
Alternative Splicing GalleryENSG00000148688
Gene ExpressionRPP30 [ NCBI-GEO ]   RPP30 [ EBI - ARRAY_EXPRESS ]   RPP30 [ SEEK ]   RPP30 [ MEM ]
Gene Expression Viewer (FireBrowse)RPP30 [ Firebrowse - Broad ]
GenevisibleExpression of RPP30 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10556
GTEX Portal (Tissue expression)RPP30
Human Protein AtlasENSG00000148688-RPP30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78346   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78346  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78346
Splice isoforms : SwissVarP78346
PhosPhoSitePlusP78346
Domains : Interpro (EBI)Pol/histidinol_Pase-like    RNase_P_p30   
Domain families : Pfam (Sanger)RNase_P_p30 (PF01876)   
Domain families : Pfam (NCBI)pfam01876   
Conserved Domain (NCBI)RPP30
Blocks (Seattle)RPP30
PDB (RSDB)6AHR    6AHU   
PDB Europe6AHR    6AHU   
PDB (PDBSum)6AHR    6AHU   
PDB (IMB)6AHR    6AHU   
Structural Biology KnowledgeBase6AHR    6AHU   
SCOP (Structural Classification of Proteins)6AHR    6AHU   
CATH (Classification of proteins structures)6AHR    6AHU   
SuperfamilyP78346
Human Protein Atlas [tissue]ENSG00000148688-RPP30 [tissue]
Peptide AtlasP78346
HPRD09359
IPIIPI00019196   IPI00941057   IPI00478229   IPI00876864   IPI00641692   
Protein Interaction databases
DIP (DOE-UCLA)P78346
IntAct (EBI)P78346
BioGRIDRPP30
STRING (EMBL)RPP30
ZODIACRPP30
Ontologies - Pathways
QuickGOP78346
Ontology : AmiGOribonuclease MRP complex  tRNA 5'-leader removal  tRNA 5'-leader removal  RNA binding  RNA binding  ribonuclease P activity  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  rRNA processing  tRNA processing  multimeric ribonuclease P complex  ribonuclease P RNA binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIribonuclease MRP complex  tRNA 5'-leader removal  tRNA 5'-leader removal  RNA binding  RNA binding  ribonuclease P activity  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  rRNA processing  tRNA processing  multimeric ribonuclease P complex  ribonuclease P RNA binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkRPP30
Atlas of Cancer Signalling NetworkRPP30
Wikipedia pathwaysRPP30
Orthology - Evolution
OrthoDB10556
GeneTree (enSembl)ENSG00000148688
Phylogenetic Trees/Animal Genes : TreeFamRPP30
HOGENOMP78346
Homologs : HomoloGeneRPP30
Homology/Alignments : Family Browser (UCSC)RPP30
Gene fusions - Rearrangements
Fusion : QuiverRPP30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPP30 [hg38]
dbVarRPP30
ClinVarRPP30
MonarchRPP30
1000_GenomesRPP30 
Exome Variant ServerRPP30
GNOMAD BrowserENSG00000148688
Varsome BrowserRPP30
Genomic Variants (DGV)RPP30 [DGVbeta]
DECIPHERRPP30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPP30 
Mutations
ICGC Data PortalRPP30 
TCGA Data PortalRPP30 
Broad Tumor PortalRPP30
OASIS PortalRPP30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPP30  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPP30
Mutations and Diseases : HGMDRPP30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPP30
DgiDB (Drug Gene Interaction Database)RPP30
DoCM (Curated mutations)RPP30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPP30 (select a term)
intoGenRPP30
Cancer3DRPP30(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606115   
Orphanet
DisGeNETRPP30
MedgenRPP30
Genetic Testing Registry RPP30
NextProtP78346 [Medical]
GENETestsRPP30
Target ValidationRPP30
Huge Navigator RPP30 [HugePedia]
ClinGenRPP30
Clinical trials, drugs, therapy
MyCancerGenomeRPP30
Protein Interactions : CTD
Pharm GKB GenePA134876345
Clinical trialRPP30
Miscellaneous
canSAR (ICR)RPP30 (select the gene name)
HarmonizomeRPP30
DataMed IndexRPP30
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPP30
EVEXRPP30
GoPubMedRPP30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:25:34 CET 2020
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