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RPP38-DT (RPP38 divergent transcript)

Identity

Alias (NCBI)C10orf111
HGNC (Hugo) RPP38-DT
HGNC Alias symbMGC35468
bA455B2.4
LocusID (NCBI) 221060
Atlas_Id 60853
Location 10p13  [Link to chromosome band 10p13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)RPP38-DT   28582
Cards
Entrez_Gene (NCBI)RPP38-DT    RPP38 divergent transcript
AliasesC10orf111
GeneCards (Weizmann)RPP38-DT
Ensembl hg19 (Hinxton)ENSG00000176236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176236 [Gene_View]  ENSG00000176236 [Sequence]  - [Contig_View]  RPP38-DT [Vega]
ICGC DataPortalENSG00000176236
TCGA cBioPortalRPP38-DT
AceView (NCBI)RPP38-DT
Genatlas (Paris)RPP38-DT
SOURCE (Princeton)RPP38-DT
Genetics Home Reference (NIH)RPP38-DT
Genomic and cartography
GoldenPath hg38 (UCSC)RPP38-DT  -  
GoldenPath hg19 (UCSC)RPP38-DT  -  
GoldenPathRPP38-DT - [CytoView hg19]  RPP38-DT - [CytoView hg38]
ImmunoBaseENSG00000176236
genome Data Viewer NCBIRPP38-DT [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK314131 BC029034 BC036401
RefSeq transcript (Entrez)NM_153244
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPP38-DT
Alternative Splicing GalleryENSG00000176236
Gene ExpressionRPP38-DT [ NCBI-GEO ]   RPP38-DT [ EBI - ARRAY_EXPRESS ]   RPP38-DT [ SEEK ]   RPP38-DT [ MEM ]
Gene Expression Viewer (FireBrowse)RPP38-DT [ Firebrowse - Broad ]
GenevisibleExpression of RPP38-DT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221060
GTEX Portal (Tissue expression)RPP38-DT
Human Protein AtlasENSG00000176236-RPP38-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N326   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N326  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N326
Splice isoforms : SwissVarQ8N326
PhosPhoSitePlusQ8N326
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPP38-DT
Blocks (Seattle)RPP38-DT
SuperfamilyQ8N326
Human Protein Atlas [tissue]ENSG00000176236-RPP38-DT [tissue]
Peptide AtlasQ8N326
HPRD16572
IPIIPI00166472   
Protein Interaction databases
DIP (DOE-UCLA)Q8N326
IntAct (EBI)Q8N326
BioGRIDRPP38-DT
STRING (EMBL)RPP38-DT
ZODIACRPP38-DT
Ontologies - Pathways
QuickGOQ8N326
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkRPP38-DT
Atlas of Cancer Signalling NetworkRPP38-DT
Wikipedia pathwaysRPP38-DT
Orthology - Evolution
OrthoDB221060
GeneTree (enSembl)ENSG00000176236
Phylogenetic Trees/Animal Genes : TreeFamRPP38-DT
HOGENOMQ8N326
Homologs : HomoloGeneRPP38-DT
Homology/Alignments : Family Browser (UCSC)RPP38-DT
Gene fusions - Rearrangements
Fusion : QuiverRPP38-DT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPP38-DT [hg38]
dbVarRPP38-DT
ClinVarRPP38-DT
MonarchRPP38-DT
1000_GenomesRPP38-DT 
Exome Variant ServerRPP38-DT
GNOMAD BrowserENSG00000176236
Varsome BrowserRPP38-DT
Genomic Variants (DGV)RPP38-DT [DGVbeta]
DECIPHERRPP38-DT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPP38-DT 
Mutations
ICGC Data PortalRPP38-DT 
TCGA Data PortalRPP38-DT 
Broad Tumor PortalRPP38-DT
OASIS PortalRPP38-DT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPP38-DT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPP38-DT
DgiDB (Drug Gene Interaction Database)RPP38-DT
DoCM (Curated mutations)RPP38-DT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPP38-DT (select a term)
intoGenRPP38-DT
Cancer3DRPP38-DT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPP38-DT
MedgenRPP38-DT
Genetic Testing Registry RPP38-DT
NextProtQ8N326 [Medical]
GENETestsRPP38-DT
Target ValidationRPP38-DT
Huge Navigator RPP38-DT [HugePedia]
ClinGenRPP38-DT
Clinical trials, drugs, therapy
MyCancerGenomeRPP38-DT
Protein Interactions : CTD
Pharm GKB GenePA134990460
Clinical trialRPP38-DT
Miscellaneous
canSAR (ICR)RPP38-DT (select the gene name)
HarmonizomeRPP38-DT
DataMed IndexRPP38-DT
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPP38-DT
EVEXRPP38-DT
GoPubMedRPP38-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:44:05 CET 2020

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