Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPP38 (ribonuclease P/MRP subunit p38)

Identity

Alias_namesribonuclease P/MRP 38kDa subunit
Other alias-
HGNC (Hugo) RPP38
LocusID (NCBI) 10557
Atlas_Id 72846
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15097180 and ends at 15104257 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPP38   30329
Cards
Entrez_Gene (NCBI)RPP38  10557  ribonuclease P/MRP subunit p38
Aliases
GeneCards (Weizmann)RPP38
Ensembl hg19 (Hinxton)ENSG00000152464 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152464 [Gene_View]  chr10:15097180-15104257 [Contig_View]  RPP38 [Vega]
ICGC DataPortalENSG00000152464
TCGA cBioPortalRPP38
AceView (NCBI)RPP38
Genatlas (Paris)RPP38
WikiGenes10557
SOURCE (Princeton)RPP38
Genetics Home Reference (NIH)RPP38
Genomic and cartography
GoldenPath hg38 (UCSC)RPP38  -     chr10:15097180-15104257 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPP38  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblRPP38 - 10p13 [CytoView hg19]  RPP38 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIRPP38 [Mapview hg19]  RPP38 [Mapview hg38]
OMIM606116   
Gene and transcription
Genbank (Entrez)AF079567 AK057006 AK223418 AW292674 BC029494
RefSeq transcript (Entrez)NM_001097590 NM_001265601 NM_006414 NM_183005
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPP38
Cluster EST : UnigeneHs.94986 [ NCBI ]
CGAP (NCI)Hs.94986
Alternative Splicing GalleryENSG00000152464
Gene ExpressionRPP38 [ NCBI-GEO ]   RPP38 [ EBI - ARRAY_EXPRESS ]   RPP38 [ SEEK ]   RPP38 [ MEM ]
Gene Expression Viewer (FireBrowse)RPP38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10557
GTEX Portal (Tissue expression)RPP38
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78345   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78345  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78345
Splice isoforms : SwissVarP78345
PhosPhoSitePlusP78345
Domains : Interpro (EBI)L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)RPP38
DMDM Disease mutations10557
Blocks (Seattle)RPP38
SuperfamilyP78345
Human Protein AtlasENSG00000152464
Peptide AtlasP78345
HPRD09360
IPIIPI00019195   IPI00478641   IPI00655699   
Protein Interaction databases
DIP (DOE-UCLA)P78345
IntAct (EBI)P78345
FunCoupENSG00000152464
BioGRIDRPP38
STRING (EMBL)RPP38
ZODIACRPP38
Ontologies - Pathways
QuickGOP78345
Ontology : AmiGOfibrillar center  tRNA 5'-leader removal  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  nucleolus  rRNA processing  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIfibrillar center  tRNA 5'-leader removal  ribonuclease P activity  protein binding  nucleus  nucleoplasm  nucleolar ribonuclease P complex  nucleolus  rRNA processing  RNA phosphodiester bond hydrolysis, endonucleolytic  
Pathways : KEGGRibosome biogenesis in eukaryotes    RNA transport   
NDEx NetworkRPP38
Atlas of Cancer Signalling NetworkRPP38
Wikipedia pathwaysRPP38
Orthology - Evolution
OrthoDB10557
GeneTree (enSembl)ENSG00000152464
Phylogenetic Trees/Animal Genes : TreeFamRPP38
HOVERGENP78345
HOGENOMP78345
Homologs : HomoloGeneRPP38
Homology/Alignments : Family Browser (UCSC)RPP38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPP38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPP38
dbVarRPP38
ClinVarRPP38
1000_GenomesRPP38 
Exome Variant ServerRPP38
ExAC (Exome Aggregation Consortium)RPP38 (select the gene name)
Genetic variants : HAPMAP10557
Genomic Variants (DGV)RPP38 [DGVbeta]
DECIPHERRPP38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPP38 
Mutations
ICGC Data PortalRPP38 
TCGA Data PortalRPP38 
Broad Tumor PortalRPP38
OASIS PortalRPP38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPP38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPP38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPP38
DgiDB (Drug Gene Interaction Database)RPP38
DoCM (Curated mutations)RPP38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPP38 (select a term)
intoGenRPP38
Cancer3DRPP38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606116   
Orphanet
MedgenRPP38
Genetic Testing Registry RPP38
NextProtP78345 [Medical]
TSGene10557
GENETestsRPP38
Target ValidationRPP38
Huge Navigator RPP38 [HugePedia]
snp3D : Map Gene to Disease10557
BioCentury BCIQRPP38
ClinGenRPP38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10557
Chemical/Pharm GKB GenePA134957031
Clinical trialRPP38
Miscellaneous
canSAR (ICR)RPP38 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPP38
EVEXRPP38
GoPubMedRPP38
iHOPRPP38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.