Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPRD1A (regulation of nuclear pre-mRNA domain containing 1A)

Identity

Alias_symbol (synonym)P15RS
FLJ10656
HsT3101
Other alias
HGNC (Hugo) RPRD1A
LocusID (NCBI) 55197
Atlas_Id 72849
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35989824 and ends at 36067594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1R (12p13.31) / RPRD1A (18q12.2)DTNA (18q12.1) / RPRD1A (18q12.2)RPRD1A (18q12.2) / ABI3BP (3q12.2)
RPRD1A (18q12.2) / PRKDC (8q11.21)RPRD1A (18q12.2) / RALGAPA2 (20p11.23)RPRD1A (18q12.2) / RPRD1A (18q12.2)
RPRD1A (18q12.2) / SLC39A6 (18q12.2)RPRD1A (18q12.2) / WDR7 (18q21.31)RPRD1A RALGAPA2
RPRD1A SLC39A6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPRD1A   25560
Cards
Entrez_Gene (NCBI)RPRD1A  55197  regulation of nuclear pre-mRNA domain containing 1A
AliasesHsT3101; P15RS
GeneCards (Weizmann)RPRD1A
Ensembl hg19 (Hinxton)ENSG00000141425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141425 [Gene_View]  chr18:35989824-36067594 [Contig_View]  RPRD1A [Vega]
ICGC DataPortalENSG00000141425
TCGA cBioPortalRPRD1A
AceView (NCBI)RPRD1A
Genatlas (Paris)RPRD1A
WikiGenes55197
SOURCE (Princeton)RPRD1A
Genetics Home Reference (NIH)RPRD1A
Genomic and cartography
GoldenPath hg38 (UCSC)RPRD1A  -     chr18:35989824-36067594 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPRD1A  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblRPRD1A - 18q12.2 [CytoView hg19]  RPRD1A - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIRPRD1A [Mapview hg19]  RPRD1A [Mapview hg38]
OMIM610347   
Gene and transcription
Genbank (Entrez)AF419845 AK001518 AK056810 AK292907 AK314569
RefSeq transcript (Entrez)NM_001303411 NM_001303412 NM_001303413 NM_018170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPRD1A
Cluster EST : UnigeneHs.668462 [ NCBI ]
CGAP (NCI)Hs.668462
Alternative Splicing GalleryENSG00000141425
Gene ExpressionRPRD1A [ NCBI-GEO ]   RPRD1A [ EBI - ARRAY_EXPRESS ]   RPRD1A [ SEEK ]   RPRD1A [ MEM ]
Gene Expression Viewer (FireBrowse)RPRD1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55197
GTEX Portal (Tissue expression)RPRD1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P16
Splice isoforms : SwissVarQ96P16
PhosPhoSitePlusQ96P16
Domaine pattern : Prosite (Expaxy)CID (PS51391)   
Domains : Interpro (EBI)CID_dom    CREPT    ENTH_VHS    RNA_pol_II-bd   
Domain families : Pfam (Sanger)CREPT (PF16566)    CTD_bind (PF04818)   
Domain families : Pfam (NCBI)pfam16566    pfam04818   
Domain families : Smart (EMBL)RPR (SM00582)  
Conserved Domain (NCBI)RPRD1A
DMDM Disease mutations55197
Blocks (Seattle)RPRD1A
PDB (SRS)4JXT    4NAC   
PDB (PDBSum)4JXT    4NAC   
PDB (IMB)4JXT    4NAC   
PDB (RSDB)4JXT    4NAC   
Structural Biology KnowledgeBase4JXT    4NAC   
SCOP (Structural Classification of Proteins)4JXT    4NAC   
CATH (Classification of proteins structures)4JXT    4NAC   
SuperfamilyQ96P16
Human Protein AtlasENSG00000141425
Peptide AtlasQ96P16
HPRD10134
IPIIPI00102425   IPI00062336   IPI00385260   
Protein Interaction databases
DIP (DOE-UCLA)Q96P16
IntAct (EBI)Q96P16
FunCoupENSG00000141425
BioGRIDRPRD1A
STRING (EMBL)RPRD1A
ZODIACRPRD1A
Ontologies - Pathways
QuickGOQ96P16
Ontology : AmiGOprotein binding  nucleoplasm  DNA-directed RNA polymerase II, holoenzyme  snRNA transcription from RNA polymerase II promoter  dephosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIprotein binding  nucleoplasm  DNA-directed RNA polymerase II, holoenzyme  snRNA transcription from RNA polymerase II promoter  dephosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkRPRD1A
Atlas of Cancer Signalling NetworkRPRD1A
Wikipedia pathwaysRPRD1A
Orthology - Evolution
OrthoDB55197
GeneTree (enSembl)ENSG00000141425
Phylogenetic Trees/Animal Genes : TreeFamRPRD1A
HOVERGENQ96P16
HOGENOMQ96P16
Homologs : HomoloGeneRPRD1A
Homology/Alignments : Family Browser (UCSC)RPRD1A
Gene fusions - Rearrangements
Fusion: TCGARPRD1A RALGAPA2
Fusion: TCGARPRD1A SLC39A6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPRD1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPRD1A
dbVarRPRD1A
ClinVarRPRD1A
1000_GenomesRPRD1A 
Exome Variant ServerRPRD1A
ExAC (Exome Aggregation Consortium)RPRD1A (select the gene name)
Genetic variants : HAPMAP55197
Genomic Variants (DGV)RPRD1A [DGVbeta]
DECIPHERRPRD1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPRD1A 
Mutations
ICGC Data PortalRPRD1A 
TCGA Data PortalRPRD1A 
Broad Tumor PortalRPRD1A
OASIS PortalRPRD1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPRD1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPRD1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPRD1A
DgiDB (Drug Gene Interaction Database)RPRD1A
DoCM (Curated mutations)RPRD1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPRD1A (select a term)
intoGenRPRD1A
Cancer3DRPRD1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610347   
Orphanet
MedgenRPRD1A
Genetic Testing Registry RPRD1A
NextProtQ96P16 [Medical]
TSGene55197
GENETestsRPRD1A
Target ValidationRPRD1A
Huge Navigator RPRD1A [HugePedia]
snp3D : Map Gene to Disease55197
BioCentury BCIQRPRD1A
ClinGenRPRD1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55197
Chemical/Pharm GKB GenePA162402042
Clinical trialRPRD1A
Miscellaneous
canSAR (ICR)RPRD1A (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPRD1A
EVEXRPRD1A
GoPubMedRPRD1A
iHOPRPRD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.