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RPRD1A (regulation of nuclear pre-mRNA domain containing 1A)

Identity

Alias (NCBI)HsT3101
P15RS
HGNC (Hugo) RPRD1A
HGNC Alias symbP15RS
FLJ10656
HsT3101
HGNC Alias namecyclin-dependent kinase 2B-inhibitor-related protein
 Cyclin-dependent kinase inhibitor 2B-related protein (p15INK4B-related protein)
LocusID (NCBI) 55197
Atlas_Id 58297
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35989824 and ends at 36067559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1R (12p13.31)::RPRD1A (18q12.2)DTNA (18q12.1)::RPRD1A (18q12.2)RPRD1A (18q12.2)::ABI3BP (3q12.2)
RPRD1A (18q12.2)::PRKDC (8q11.21)RPRD1A (18q12.2)::RALGAPA2 (20p11.23)RPRD1A (18q12.2)::RPRD1A (18q12.2)
RPRD1A (18q12.2)::SLC39A6 (18q12.2)RPRD1A (18q12.2)::WDR7 (18q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPRD1A   25560
Cards
Entrez_Gene (NCBI)RPRD1A    regulation of nuclear pre-mRNA domain containing 1A
AliasesHsT3101; P15RS
GeneCards (Weizmann)RPRD1A
Ensembl hg19 (Hinxton)ENSG00000141425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141425 [Gene_View]  ENSG00000141425 [Sequence]  chr18:35989824-36067559 [Contig_View]  RPRD1A [Vega]
ICGC DataPortalENSG00000141425
TCGA cBioPortalRPRD1A
AceView (NCBI)RPRD1A
Genatlas (Paris)RPRD1A
SOURCE (Princeton)RPRD1A
Genetics Home Reference (NIH)RPRD1A
Genomic and cartography
GoldenPath hg38 (UCSC)RPRD1A  -     chr18:35989824-36067559 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPRD1A  -     18q12.2   [Description]    (hg19-Feb_2009)
GoldenPathRPRD1A - 18q12.2 [CytoView hg19]  RPRD1A - 18q12.2 [CytoView hg38]
ImmunoBaseENSG00000141425
Genome Data Viewer NCBIRPRD1A [Mapview hg19]  
OMIM610347   
Gene and transcription
Genbank (Entrez)AF419845 AK001518 AK056810 AK292907 AK314569
RefSeq transcript (Entrez)NM_001303411 NM_001303412 NM_001303413 NM_018170
Consensus coding sequences : CCDS (NCBI)RPRD1A
Gene ExpressionRPRD1A [ NCBI-GEO ]   RPRD1A [ EBI - ARRAY_EXPRESS ]   RPRD1A [ SEEK ]   RPRD1A [ MEM ]
Gene Expression Viewer (FireBrowse)RPRD1A [ Firebrowse - Broad ]
GenevisibleExpression of RPRD1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55197
GTEX Portal (Tissue expression)RPRD1A
Human Protein AtlasENSG00000141425-RPRD1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P16
PhosPhoSitePlusQ96P16
Domaine pattern : Prosite (Expaxy)CID (PS51391)   
Domains : Interpro (EBI)CID_dom    CREPT    ENTH_VHS   
Domain families : Pfam (Sanger)CID (PF04818)    CREPT (PF16566)   
Domain families : Pfam (NCBI)pfam04818    pfam16566   
Domain families : Smart (EMBL)RPR (SM00582)  
Conserved Domain (NCBI)RPRD1A
PDB (RSDB)4JXT    4NAC   
PDB Europe4JXT    4NAC   
PDB (PDBSum)4JXT    4NAC   
PDB (IMB)4JXT    4NAC   
Structural Biology KnowledgeBase4JXT    4NAC   
SCOP (Structural Classification of Proteins)4JXT    4NAC   
CATH (Classification of proteins structures)4JXT    4NAC   
SuperfamilyQ96P16
AlphaFold pdb e-kbQ96P16   
Human Protein Atlas [tissue]ENSG00000141425-RPRD1A [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96P16
IntAct (EBI)Q96P16
BioGRIDRPRD1A
STRING (EMBL)RPRD1A
ZODIACRPRD1A
Ontologies - Pathways
QuickGOQ96P16
Ontology : AmiGORNA polymerase II complex binding  protein binding  nucleoplasm  RNA polymerase II, holoenzyme  RNA polymerase II, holoenzyme  mRNA 3'-end processing  snRNA transcription by RNA polymerase II  dephosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIRNA polymerase II complex binding  protein binding  nucleoplasm  RNA polymerase II, holoenzyme  RNA polymerase II, holoenzyme  mRNA 3'-end processing  snRNA transcription by RNA polymerase II  dephosphorylation of RNA polymerase II C-terminal domain  
NDEx NetworkRPRD1A
Atlas of Cancer Signalling NetworkRPRD1A
Wikipedia pathwaysRPRD1A
Orthology - Evolution
OrthoDB55197
GeneTree (enSembl)ENSG00000141425
Phylogenetic Trees/Animal Genes : TreeFamRPRD1A
Homologs : HomoloGeneRPRD1A
Homology/Alignments : Family Browser (UCSC)RPRD1A
Gene fusions - Rearrangements
Fusion : QuiverRPRD1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPRD1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPRD1A
dbVarRPRD1A
ClinVarRPRD1A
MonarchRPRD1A
1000_GenomesRPRD1A 
Exome Variant ServerRPRD1A
GNOMAD BrowserENSG00000141425
Varsome BrowserRPRD1A
ACMGRPRD1A variants
VarityQ96P16
Genomic Variants (DGV)RPRD1A [DGVbeta]
DECIPHERRPRD1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPRD1A 
Mutations
ICGC Data PortalRPRD1A 
TCGA Data PortalRPRD1A 
Broad Tumor PortalRPRD1A
OASIS PortalRPRD1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPRD1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPRD1A
Mutations and Diseases : HGMDRPRD1A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPRD1A
DgiDB (Drug Gene Interaction Database)RPRD1A
DoCM (Curated mutations)RPRD1A
CIViC (Clinical Interpretations of Variants in Cancer)RPRD1A
Cancer3DRPRD1A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610347   
Orphanet
DisGeNETRPRD1A
MedgenRPRD1A
Genetic Testing Registry RPRD1A
NextProtQ96P16 [Medical]
GENETestsRPRD1A
Target ValidationRPRD1A
Huge Navigator RPRD1A [HugePedia]
ClinGenRPRD1A
Clinical trials, drugs, therapy
MyCancerGenomeRPRD1A
Protein Interactions : CTDRPRD1A
PharosQ96P16
Clinical trialRPRD1A
Miscellaneous
canSAR (ICR)RPRD1A
HarmonizomeRPRD1A
ARCHS4RPRD1A
DataMed IndexRPRD1A
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPRD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:31:51 CET 2022

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