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RPRD2 (regulation of nuclear pre-mRNA domain containing 2)

Identity

Alias_namesKIAA0460
KIAA0460
Alias_symbol (synonym)FLJ32145
HSPC099
Other alias
HGNC (Hugo) RPRD2
LocusID (NCBI) 23248
Atlas_Id 72850
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 150364111 and ends at 150476565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOCK10 (2q36.2) / RPRD2 (1q21.3)RPRD2 (1q21.3) / BOLA1 (1q21.2)RPRD2 (1q21.3) / GOLPH3L (1q21.3)
RPRD2 (1q21.3) / MED12 (Xq13.1)RPRD2 (1q21.3) / MEF2C (5q14.3)RPRD2 (1q21.3) / MYH11 (16p13.11)
RPRD2 (1q21.3) / S100A2 (1q21.3)RPRD2 (1q21.3) / SHC1 (1q21.3)RPRD2 (1q21.3) / TMEM5 (12q14.2)
RPRD2 (1q21.3) / VPS45 (1q21.2)SHC1 (1q21.3) / RPRD2 (1q21.3)RPRD2 VPS45
RPRD2 SHC1RPRD2 S100A2RPRD2 BOLA1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPRD2   29039
Cards
Entrez_Gene (NCBI)RPRD2  23248  regulation of nuclear pre-mRNA domain containing 2
AliasesHSPC099; KIAA0460
GeneCards (Weizmann)RPRD2
Ensembl hg19 (Hinxton)ENSG00000163125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163125 [Gene_View]  chr1:150364111-150476565 [Contig_View]  RPRD2 [Vega]
ICGC DataPortalENSG00000163125
TCGA cBioPortalRPRD2
AceView (NCBI)RPRD2
Genatlas (Paris)RPRD2
WikiGenes23248
SOURCE (Princeton)RPRD2
Genetics Home Reference (NIH)RPRD2
Genomic and cartography
GoldenPath hg38 (UCSC)RPRD2  -     chr1:150364111-150476565 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPRD2  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblRPRD2 - 1q21.2 [CytoView hg19]  RPRD2 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIRPRD2 [Mapview hg19]  RPRD2 [Mapview hg38]
OMIM614695   
Gene and transcription
Genbank (Entrez)AA749025 AB007929 AF161362 AK022984 AK026120
RefSeq transcript (Entrez)NM_001297673 NM_001297674 NM_015203
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPRD2
Cluster EST : UnigeneHs.213666 [ NCBI ]
CGAP (NCI)Hs.213666
Alternative Splicing GalleryENSG00000163125
Gene ExpressionRPRD2 [ NCBI-GEO ]   RPRD2 [ EBI - ARRAY_EXPRESS ]   RPRD2 [ SEEK ]   RPRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPRD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23248
GTEX Portal (Tissue expression)RPRD2
Human Protein AtlasENSG00000163125-RPRD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VT52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VT52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VT52
Splice isoforms : SwissVarQ5VT52
PhosPhoSitePlusQ5VT52
Domaine pattern : Prosite (Expaxy)CID (PS51391)   
Domains : Interpro (EBI)CID_dom    CREPT    ENTH_VHS    RNA_pol_II-bd   
Domain families : Pfam (Sanger)CREPT (PF16566)    CTD_bind (PF04818)   
Domain families : Pfam (NCBI)pfam16566    pfam04818   
Domain families : Smart (EMBL)RPR (SM00582)  
Conserved Domain (NCBI)RPRD2
DMDM Disease mutations23248
Blocks (Seattle)RPRD2
PDB (SRS)4FLB   
PDB (PDBSum)4FLB   
PDB (IMB)4FLB   
PDB (RSDB)4FLB   
Structural Biology KnowledgeBase4FLB   
SCOP (Structural Classification of Proteins)4FLB   
CATH (Classification of proteins structures)4FLB   
SuperfamilyQ5VT52
Human Protein Atlas [tissue]ENSG00000163125-RPRD2 [tissue]
Peptide AtlasQ5VT52
IPIIPI00384541   IPI00760919   IPI00639879   IPI00647267   IPI01013654   
Protein Interaction databases
DIP (DOE-UCLA)Q5VT52
IntAct (EBI)Q5VT52
FunCoupENSG00000163125
BioGRIDRPRD2
STRING (EMBL)RPRD2
ZODIACRPRD2
Ontologies - Pathways
QuickGOQ5VT52
Ontology : AmiGOnucleoplasm  DNA-directed RNA polymerase II, holoenzyme  snRNA transcription from RNA polymerase II promoter  
Ontology : EGO-EBInucleoplasm  DNA-directed RNA polymerase II, holoenzyme  snRNA transcription from RNA polymerase II promoter  
NDEx NetworkRPRD2
Atlas of Cancer Signalling NetworkRPRD2
Wikipedia pathwaysRPRD2
Orthology - Evolution
OrthoDB23248
GeneTree (enSembl)ENSG00000163125
Phylogenetic Trees/Animal Genes : TreeFamRPRD2
HOVERGENQ5VT52
HOGENOMQ5VT52
Homologs : HomoloGeneRPRD2
Homology/Alignments : Family Browser (UCSC)RPRD2
Gene fusions - Rearrangements
Fusion: TCGARPRD2 VPS45
Fusion: TCGARPRD2 SHC1
Fusion: TCGARPRD2 S100A2
Fusion: TCGARPRD2 BOLA1
Fusion: Tumor Portal RPRD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPRD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPRD2
dbVarRPRD2
ClinVarRPRD2
1000_GenomesRPRD2 
Exome Variant ServerRPRD2
ExAC (Exome Aggregation Consortium)ENSG00000163125
GNOMAD BrowserENSG00000163125
Genetic variants : HAPMAP23248
Genomic Variants (DGV)RPRD2 [DGVbeta]
DECIPHERRPRD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPRD2 
Mutations
ICGC Data PortalRPRD2 
TCGA Data Portad8/tD>RPRD2 
Broad Tumor PortalRPRD2
OASIS PortalRPRD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPRD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPRD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPRD2
DgiDB (Drug Gene Interaction Database)RPRD2
DoCM (Curated mutations)RPRD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPRD2 (select a term)
intoGenRPRD2
Cancer3DRPRD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614695   
Orphanet
MedgenRPRD2
Genetic Testing Registry RPRD2
NextProtQ5VT52 [Medical]
TSGene23248
GENETestsRPRD2
Target ValidationRPRD2
Huge Navigator RPRD2 [HugePedia]
snp3D : Map Gene to Disease23248
BioCentury BCIQRPRD2
ClinGenRPRD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23248
Chemical/Pharm GKB GenePA162402062
Clinical trialRPRD2
Miscellaneous
canSAR (ICR)RPRD2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPRD2
EVEXRPRD2
GoPubMedRPRD2
iHOPRPRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:25:50 CET 2017

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