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RPRD2 (regulation of nuclear pre-mRNA domain containing 2)

Identity

Alias (NCBI)HSPC099
KIAA0460
HGNC (Hugo) RPRD2
HGNC Alias symbFLJ32145
HSPC099
HGNC Previous nameKIAA0460
HGNC Previous nameKIAA0460
LocusID (NCBI) 23248
Atlas_Id 72850
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 150364111 and ends at 150476565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOCK10 (2q36.2) / RPRD2 (1q21.3)RPRD2 (1q21.3) / BOLA1 (1q21.2)RPRD2 (1q21.3) / GOLPH3L (1q21.3)
RPRD2 (1q21.3) / MED12 (Xq13.1)RPRD2 (1q21.3) / MEF2C (5q14.3)RPRD2 (1q21.3) / MYH11 (16p13.11)
RPRD2 (1q21.3) / S100A2 (1q21.3)RPRD2 (1q21.3) / SHC1 (1q21.3)RPRD2 (1q21.3) / TMEM5 (12q14.2)
RPRD2 (1q21.3) / VPS45 (1q21.2)SHC1 (1q21.3) / RPRD2 (1q21.3)RPRD2 VPS45
RPRD2 SHC1RPRD2 S100A2RPRD2 BOLA1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)RPRD2   29039
Cards
Entrez_Gene (NCBI)RPRD2    regulation of nuclear pre-mRNA domain containing 2
AliasesHSPC099; KIAA0460
GeneCards (Weizmann)RPRD2
Ensembl hg19 (Hinxton)ENSG00000163125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163125 [Gene_View]  ENSG00000163125 [Sequence]  chr1:150364111-150476565 [Contig_View]  RPRD2 [Vega]
ICGC DataPortalENSG00000163125
TCGA cBioPortalRPRD2
AceView (NCBI)RPRD2
Genatlas (Paris)RPRD2
SOURCE (Princeton)RPRD2
Genetics Home Reference (NIH)RPRD2
Genomic and cartography
GoldenPath hg38 (UCSC)RPRD2  -     chr1:150364111-150476565 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPRD2  -     1q21.2   [Description]    (hg19-Feb_2009)
GoldenPathRPRD2 - 1q21.2 [CytoView hg19]  RPRD2 - 1q21.2 [CytoView hg38]
ImmunoBaseENSG00000163125
Genome Data Viewer NCBIRPRD2 [Mapview hg19]  
OMIM614695   
Gene and transcription
Genbank (Entrez)AA749025 AB007929 AF161362 AK022984 AK026120
RefSeq transcript (Entrez)NM_001297673 NM_001297674 NM_001387114 NM_001387115 NM_001387116 NM_001387117 NM_001387118 NM_001387119 NM_001387120 NM_001387121 NM_001387122 NM_001387123 NM_001387124 NM_015203
Consensus coding sequences : CCDS (NCBI)RPRD2
Gene ExpressionRPRD2 [ NCBI-GEO ]   RPRD2 [ EBI - ARRAY_EXPRESS ]   RPRD2 [ SEEK ]   RPRD2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPRD2 [ Firebrowse - Broad ]
GenevisibleExpression of RPRD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23248
GTEX Portal (Tissue expression)RPRD2
Human Protein AtlasENSG00000163125-RPRD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPRD2
Human Protein Atlas [tissue]ENSG00000163125-RPRD2 [tissue]
Protein Interaction databases
BioGRIDRPRD2
STRING (EMBL)RPRD2
ZODIACRPRD2
Ontologies - Pathways
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPRD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:20 CEST 2021

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