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RPRML (reprimo like)

Identity

Alias_namesreprimo-like
Alias_symbol (synonym)MGC43894
Other alias-
HGNC (Hugo) RPRML
LocusID (NCBI) 388394
Atlas_Id 72851
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46978156 and ends at 46979248 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPRML   32422
Cards
Entrez_Gene (NCBI)RPRML  388394  reprimo like
Aliases
GeneCards (Weizmann)RPRML
Ensembl hg19 (Hinxton)ENSG00000179673 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179673 [Gene_View]  chr17:46978156-46979248 [Contig_View]  RPRML [Vega]
ICGC DataPortalENSG00000179673
TCGA cBioPortalRPRML
AceView (NCBI)RPRML
Genatlas (Paris)RPRML
WikiGenes388394
SOURCE (Princeton)RPRML
Genetics Home Reference (NIH)RPRML
Genomic and cartography
GoldenPath hg38 (UCSC)RPRML  -     chr17:46978156-46979248 -  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPRML  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblRPRML - 17q21.32 [CytoView hg19]  RPRML - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIRPRML [Mapview hg19]  RPRML [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033942 BC108690
RefSeq transcript (Entrez)NM_203400
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPRML
Cluster EST : UnigeneHs.367999 [ NCBI ]
CGAP (NCI)Hs.367999
Alternative Splicing GalleryENSG00000179673
Gene ExpressionRPRML [ NCBI-GEO ]   RPRML [ EBI - ARRAY_EXPRESS ]   RPRML [ SEEK ]   RPRML [ MEM ]
Gene Expression Viewer (FireBrowse)RPRML [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388394
GTEX Portal (Tissue expression)RPRML
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4K4
Splice isoforms : SwissVarQ8N4K4
PhosPhoSitePlusQ8N4K4
Domains : Interpro (EBI)Reprimo-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPRML
DMDM Disease mutations388394
Blocks (Seattle)RPRML
SuperfamilyQ8N4K4
Human Protein AtlasENSG00000179673
Peptide AtlasQ8N4K4
HPRD14201
IPIIPI00397631   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4K4
IntAct (EBI)Q8N4K4
FunCoupENSG00000179673
BioGRIDRPRML
STRING (EMBL)RPRML
ZODIACRPRML
Ontologies - Pathways
QuickGOQ8N4K4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkRPRML
Atlas of Cancer Signalling NetworkRPRML
Wikipedia pathwaysRPRML
Orthology - Evolution
OrthoDB388394
GeneTree (enSembl)ENSG00000179673
Phylogenetic Trees/Animal Genes : TreeFamRPRML
HOVERGENQ8N4K4
HOGENOMQ8N4K4
Homologs : HomoloGeneRPRML
Homology/Alignments : Family Browser (UCSC)RPRML
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPRML [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPRML
dbVarRPRML
ClinVarRPRML
1000_GenomesRPRML 
Exome Variant ServerRPRML
ExAC (Exome Aggregation Consortium)RPRML (select the gene name)
Genetic variants : HAPMAP388394
Genomic Variants (DGV)RPRML [DGVbeta]
DECIPHERRPRML [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPRML 
Mutations
ICGC Data PortalRPRML 
TCGA Data PortalRPRML 
Broad Tumor PortalRPRML
OASIS PortalRPRML [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPRML  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPRML
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPRML
DgiDB (Drug Gene Interaction Database)RPRML
DoCM (Curated mutations)RPRML (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPRML (select a term)
intoGenRPRML
Cancer3DRPRML(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPRML
Genetic Testing Registry RPRML
NextProtQ8N4K4 [Medical]
TSGene388394
GENETestsRPRML
Target ValidationRPRML
Huge Navigator RPRML [HugePedia]
snp3D : Map Gene to Disease388394
BioCentury BCIQRPRML
ClinGenRPRML
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388394
Chemical/Pharm GKB GenePA142670990
Clinical trialRPRML
Miscellaneous
canSAR (ICR)RPRML (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPRML
EVEXRPRML
GoPubMedRPRML
iHOPRPRML
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:50 CEST 2017

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