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RPS10 (ribosomal protein S10)

Identity

Other namesDBA9
S10
HGNC (Hugo) RPS10
LocusID (NCBI) 6204
Location 6p21.31
Location_base_pair Starts at 34385231 and ends at 34393902 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)RPS10   10383
Cards
Entrez_Gene (NCBI)RPS10  6204  ribosomal protein S10
GeneCards (Weizmann)RPS10
Ensembl hg19 (Hinxton)ENSG00000124614 [Gene_View]  chr6:34385231-34393902 [Contig_View]  RPS10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124614 [Gene_View]  chr6:34385231-34393902 [Contig_View]  RPS10 [Vega]
ICGC DataPortalENSG00000124614
cBioPortalRPS10
AceView (NCBI)RPS10
Genatlas (Paris)RPS10
WikiGenes6204
SOURCE (Princeton)RPS10
Genomic and cartography
GoldenPath hg19 (UCSC)RPS10  -     chr6:34385231-34393902 -  6p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS10  -     6p21.31   [Description]    (hg38-Dec_2013)
EnsemblRPS10 - 6p21.31 [CytoView hg19]  RPS10 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIRPS10 [Mapview hg19]  RPS10 [Mapview hg38]
OMIM603632   613308   
Gene and transcription
Genbank (Entrez)AB209165 AK311797 BC001032 BC001955 BC005012
RefSeq transcript (Entrez)NM_001014 NM_001203245 NM_001204091
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_023200 NT_007592 NW_001838980 NW_004929326
Consensus coding sequences : CCDS (NCBI)RPS10
Cluster EST : UnigeneHs.645317 [ NCBI ]
CGAP (NCI)Hs.645317
Alternative Splicing : Fast-db (Paris)GSHG0034025
Alternative Splicing GalleryENSG00000124614
Gene ExpressionRPS10 [ NCBI-GEO ]     RPS10 [ SEEK ]   RPS10 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46783 (Uniprot)
NextProtP46783  [Medical]
With graphics : InterProP46783
Splice isoforms : SwissVarP46783 (Swissvar)
Domains : Interpro (EBI)S10_plectin_N   
Related proteins : CluSTrP46783
Domain families : Pfam (Sanger)S10_plectin (PF03501)   
Domain families : Pfam (NCBI)pfam03501   
DMDM Disease mutations6204
Blocks (Seattle)P46783
PDB (SRS)3J3A   
PDB (PDBSum)3J3A   
PDB (IMB)3J3A   
PDB (RSDB)3J3A   
Human Protein AtlasENSG00000124614
Peptide AtlasP46783
HPRD04697
IPIIPI00008438   IPI00816715   IPI00749512   IPI00478810   
Protein Interaction databases
DIP (DOE-UCLA)P46783
IntAct (EBI)P46783
FunCoupENSG00000124614
BioGRIDRPS10
IntegromeDBRPS10
STRING (EMBL)RPS10
Ontologies - Pathways
QuickGOP46783
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  protein binding  nucleolus  cytoplasm  cytosol  ribosome  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  protein binding  nucleolus  cytoplasm  cytosol  ribosome  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPS10
DoCM (Curated mutations)RPS10
Wikipedia pathwaysRPS10
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRPS10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS10
dbVarRPS10
ClinVarRPS10
1000_GenomesRPS10 
Exome Variant ServerRPS10
SNP (GeneSNP Utah)RPS10
SNP : HGBaseRPS10
Genetic variants : HAPMAPRPS10
Genomic VariantsRPS10  RPS10 [DGVbeta]
Mutations
ICGC Data PortalENSG00000124614 
Somatic Mutations in Cancer : COSMICRPS10 
CONAN: Copy Number AnalysisRPS10 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:34385231-34393902
Mutations and Diseases : HGMDRPS10
OMIM603632    613308   
MedgenRPS10
NextProtP46783 [Medical]
GENETestsRPS10
Disease Genetic AssociationRPS10
Huge Navigator RPS10 [HugePedia]  RPS10 [HugeCancerGEM]
snp3D : Map Gene to Disease6204
DGIdb (Drug Gene Interaction db)RPS10
General knowledge
Homologs : HomoloGeneRPS10
Homology/Alignments : Family Browser (UCSC)RPS10
Phylogenetic Trees/Animal Genes : TreeFamRPS10
Chemical/Protein Interactions : CTD6204
Chemical/Pharm GKB GenePA34779
Clinical trialRPS10
Cancer Resource (Charite)ENSG00000124614
Other databases
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
CoreMineRPS10
GoPubMedRPS10
iHOPRPS10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:15:17 CET 2014

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