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RPS11 (ribosomal protein S11)

Identity

Alias_symbol (synonym)S11
Other alias
HGNC (Hugo) RPS11
LocusID (NCBI) 6205
Atlas_Id 54592
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49496365 and ends at 49499712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DLK1 (14q32.2) / RPS11 (19q13.33)GOLGA3 (12q24.33) / RPS11 (19q13.33)NDUFB4 (3q13.33) / RPS11 (19q13.33)
RPS11 (19q13.33) / ALDH16A1 (19q13.33)RPS11 (19q13.33) / FLT3LG (19q13.33)RPS11 (19q13.33) / IDH2 (15q26.1)
RPS11 (19q13.33) / LIPC (15q21.3)RPS11 19q13.33 / FLT3LG 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS11   10384
Cards
Entrez_Gene (NCBI)RPS11  6205  ribosomal protein S11
AliasesS11
GeneCards (Weizmann)RPS11
Ensembl hg19 (Hinxton)ENSG00000142534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142534 [Gene_View]  chr19:49496365-49499712 [Contig_View]  RPS11 [Vega]
ICGC DataPortalENSG00000142534
TCGA cBioPortalRPS11
AceView (NCBI)RPS11
Genatlas (Paris)RPS11
WikiGenes6205
SOURCE (Princeton)RPS11
Genetics Home Reference (NIH)RPS11
Genomic and cartography
GoldenPath hg38 (UCSC)RPS11  -     chr19:49496365-49499712 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS11  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblRPS11 - 19q13.33 [CytoView hg19]  RPS11 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRPS11 [Mapview hg19]  RPS11 [Mapview hg38]
OMIM180471   
Gene and transcription
Genbank (Entrez)AK311809 AV759412 BC007283 BC007603 BC007945
RefSeq transcript (Entrez)NM_001015
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS11
Cluster EST : UnigeneHs.433529 [ NCBI ]
CGAP (NCI)Hs.433529
Alternative Splicing GalleryENSG00000142534
Gene ExpressionRPS11 [ NCBI-GEO ]   RPS11 [ EBI - ARRAY_EXPRESS ]   RPS11 [ SEEK ]   RPS11 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6205
GTEX Portal (Tissue expression)RPS11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62280   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62280  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62280
Splice isoforms : SwissVarP62280
PhosPhoSitePlusP62280
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S17 (PS00056)   
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S11_N    Ribosomal_S17/S11    Ribosomal_S17_arc-typ    Ribosomal_S17_CS   
Domain families : Pfam (Sanger)Ribosomal_S17 (PF00366)    Ribosomal_S17_N (PF16205)   
Domain families : Pfam (NCBI)pfam00366    pfam16205   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S17 (PD001295)   
Conserved Domain (NCBI)RPS11
DMDM Disease mutations6205
Blocks (Seattle)RPS11
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62280
Human Protein AtlasENSG00000142534
Peptide AtlasP62280
HPRD01599
IPIIPI00025091   
Protein Interaction databases
DIP (DOE-UCLA)P62280
IntAct (EBI)P62280
FunCoupENSG00000142534
BioGRIDRPS11
STRING (EMBL)RPS11
ZODIACRPS11
Ontologies - Pathways
QuickGOP62280
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  osteoblast differentiation  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  rRNA binding  cytosolic small ribosomal subunit  extracellular matrix  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  osteoblast differentiation  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  rRNA binding  cytosolic small ribosomal subunit  extracellular matrix  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS11
Atlas of Cancer Signalling NetworkRPS11
Wikipedia pathwaysRPS11
Orthology - Evolution
OrthoDB6205
GeneTree (enSembl)ENSG00000142534
Phylogenetic Trees/Animal Genes : TreeFamRPS11
HOVERGENP62280
HOGENOMP62280
Homologs : HomoloGeneRPS11
Homology/Alignments : Family Browser (UCSC)RPS11
Gene fusions - Rearrangements
Fusion : MitelmanRPS11/FLT3LG [19q13.33/19q13.33]  
Fusion: TCGARPS11 19q13.33 FLT3LG 19q13.33 LAML
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS11
dbVarRPS11
ClinVarRPS11
1000_GenomesRPS11 
Exome Variant ServerRPS11
ExAC (Exome Aggregation Consortium)RPS11 (select the gene name)
Genetic variants : HAPMAP6205
Genomic Variants (DGV)RPS11 [DGVbeta]
DECIPHERRPS11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS11 
Mutations
ICGC Data PortalRPS11 
TCGA Data PortalRPS11 
Broad Tumor PortalRPS11
OASIS PortalRPS11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS11
DgiDB (Drug Gene Interaction Database)RPS11
DoCM (Curated mutations)RPS11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS11 (select a term)
intoGenRPS11
Cancer3DRPS11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180471   
Orphanet
MedgenRPS11
Genetic Testing Registry RPS11
NextProtP62280 [Medical]
TSGene6205
GENETestsRPS11
Target ValidationRPS11
Huge Navigator RPS11 [HugePedia]
snp3D : Map Gene to Disease6205
BioCentury BCIQRPS11
ClinGenRPS11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6205
Chemical/Pharm GKB GenePA34782
Clinical trialRPS11
Miscellaneous
canSAR (ICR)RPS11 (select the gene name)
Probes
Litterature
PubMed76 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS11
EVEXRPS11
GoPubMedRPS11
iHOPRPS11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:28 CEST 2017

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