Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS12 (ribosomal protein S12)

Identity

Alias_symbol (synonym)S12
Other alias
HGNC (Hugo) RPS12
LocusID (NCBI) 6206
Atlas_Id 42161
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132814569 and ends at 132817564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
A2M (12p13.31) / RPS12 (6q23.2)RPS12 (6q23.2) / NIPAL3 (1p36.11)RPS12 (6q23.2) / PAK4 (19q13.2)
RPS12 (6q23.2) / SERINC1 (6q22.31)RPS12 (6q23.2) / SMYD3 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS12   10385
Cards
Entrez_Gene (NCBI)RPS12  6206  ribosomal protein S12
AliasesS12
GeneCards (Weizmann)RPS12
Ensembl hg19 (Hinxton)ENSG00000112306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112306 [Gene_View]  ENSG00000112306 [Sequence]  chr6:132814569-132817564 [Contig_View]  RPS12 [Vega]
ICGC DataPortalENSG00000112306
TCGA cBioPortalRPS12
AceView (NCBI)RPS12
Genatlas (Paris)RPS12
WikiGenes6206
SOURCE (Princeton)RPS12
Genetics Home Reference (NIH)RPS12
Genomic and cartography
GoldenPath hg38 (UCSC)RPS12  -     chr6:132814569-132817564 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS12  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblRPS12 - 6q23.2 [CytoView hg19]  RPS12 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIRPS12 [Mapview hg19]  RPS12 [Mapview hg38]
OMIM603660   
Gene and transcription
Genbank (Entrez)AK311826 BC017321 BC071930 BC095424 BQ276878
RefSeq transcript (Entrez)NM_001016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS12
Cluster EST : UnigeneHs.546289 [ NCBI ]
CGAP (NCI)Hs.546289
Alternative Splicing GalleryENSG00000112306
Gene ExpressionRPS12 [ NCBI-GEO ]   RPS12 [ EBI - ARRAY_EXPRESS ]   RPS12 [ SEEK ]   RPS12 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6206
GTEX Portal (Tissue expression)RPS12
Human Protein AtlasENSG00000112306-RPS12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP25398   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP25398  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP25398
Splice isoforms : SwissVarP25398
PhosPhoSitePlusP25398
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S12E (PS01189)   
Domains : Interpro (EBI)L30e-like    Ribosomal_L7Ae/L30e/S12e/Gad45    Ribosomal_S12e   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)RPS12
DMDM Disease mutations6206
Blocks (Seattle)RPS12
PDB (SRS)4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP25398
Human Protein Atlas [tissue]ENSG00000112306-RPS12 [tissue]
Peptide AtlasP25398
HPRD04714
IPIIPI00013917   
Protein Interaction databases
DIP (DOE-UCLA)P25398
IntAct (EBI)P25398
FunCoupENSG00000112306
BioGRIDRPS12
STRING (EMBL)RPS12
ZODIACRPS12
Ontologies - Pathways
QuickGOP25398
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  Golgi apparatus  cytosol  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  intracellular membrane-bounded organelle  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  Golgi apparatus  cytosol  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  intracellular membrane-bounded organelle  
Pathways : KEGGRibosome   
NDEx NetworkRPS12
Atlas of Cancer Signalling NetworkRPS12
Wikipedia pathwaysRPS12
Orthology - Evolution
OrthoDB6206
GeneTree (enSembl)ENSG00000112306
Phylogenetic Trees/Animal Genes : TreeFamRPS12
HOVERGENP25398
HOGENOMP25398
Homologs : HomoloGeneRPS12
Homology/Alignments : Family Browser (UCSC)RPS12
Gene fusions - Rearrangements
Fusion Cancer (Beijing)A2M [12p13.31]  -  RPS12 [6q23.2]  [FUSC002102]
Fusion : QuiverRPS12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS12
dbVarRPS12
ClinVarRPS12
1000_GenomesRPS12 
Exome Variant ServerRPS12
ExAC (Exome Aggregation Consortium)ENSG00000112306
GNOMAD BrowserENSG00000112306
Genetic variants : HAPMAP6206
Genomic Variants (DGV)RPS12 [DGVbeta]
DECIPHERRPS12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS12 
Mutations
ICGC Data PortalRPS12 
TCGA Data PortalRPS12 
Broad Tumor PortalRPS12
OASIS PortalRPS12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS12
DgiDB (Drug Gene Interaction Database)RPS12
DoCM (Curated mutations)RPS12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS12 (select a term)
intoGenRPS12
Cancer3DRPS12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603660   
Orphanet
DisGeNETRPS12
MedgenRPS12
Genetic Testing Registry RPS12
NextProtP25398 [Medical]
TSGene6206
GENETestsRPS12
Target ValidationRPS12
Huge Navigator RPS12 [HugePedia]
snp3D : Map Gene to Disease6206
BioCentury BCIQRPS12
ClinGenRPS12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6206
Chemical/Pharm GKB GenePA34784
Clinical trialRPS12
Miscellaneous
canSAR (ICR)RPS12 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS12
EVEXRPS12
GoPubMedRPS12
iHOPRPS12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:47:50 CEST 2018

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