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RPS15 (ribosomal protein S15)

Identity

Alias_symbol (synonym)RIG
MGC111130
S15
Other alias
HGNC (Hugo) RPS15
LocusID (NCBI) 6209
Atlas_Id 42162
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1438363 and ends at 1440496 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPS15 (19p13.3) / PLEC (8q24.3)TIMELESS (12q13.3) / RPS15 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS15   10388
Cards
Entrez_Gene (NCBI)RPS15  6209  ribosomal protein S15
AliasesRIG; S15
GeneCards (Weizmann)RPS15
Ensembl hg19 (Hinxton)ENSG00000115268 [Gene_View]  chr19:1438363-1440496 [Contig_View]  RPS15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115268 [Gene_View]  chr19:1438363-1440496 [Contig_View]  RPS15 [Vega]
ICGC DataPortalENSG00000115268
TCGA cBioPortalRPS15
AceView (NCBI)RPS15
Genatlas (Paris)RPS15
WikiGenes6209
SOURCE (Princeton)RPS15
Genetics Home Reference (NIH)RPS15
Genomic and cartography
GoldenPath hg19 (UCSC)RPS15  -     chr19:1438363-1440496 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS15  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblRPS15 - 19p13.3 [CytoView hg19]  RPS15 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIRPS15 [Mapview hg19]  RPS15 [Mapview hg38]
OMIM180535   
Gene and transcription
Genbank (Entrez)AF145025 BC064908 BC080543 BC105810 BC141832
RefSeq transcript (Entrez)NM_001018 NM_001308226
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_017014 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)RPS15
Cluster EST : UnigeneHs.406683 [ NCBI ]
CGAP (NCI)Hs.406683
Alternative Splicing GalleryENSG00000115268
Gene ExpressionRPS15 [ NCBI-GEO ]   RPS15 [ EBI - ARRAY_EXPRESS ]   RPS15 [ SEEK ]   RPS15 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6209
GTEX Portal (Tissue expression)RPS15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62841   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62841  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62841
Splice isoforms : SwissVarP62841
PhosPhoSitePlusP62841
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S19 (PS00323)   
Domains : Interpro (EBI)Ribosomal_S19    Ribosomal_S19_CS    Ribosomal_S19_SF    Ribosomal_S19A/S15e   
Domain families : Pfam (Sanger)Ribosomal_S19 (PF00203)   
Domain families : Pfam (NCBI)pfam00203   
Conserved Domain (NCBI)RPS15
DMDM Disease mutations6209
Blocks (Seattle)RPS15
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX   
SuperfamilyP62841
Human Protein AtlasENSG00000115268
Peptide AtlasP62841
HPRD01613
IPIIPI00479058   
Protein Interaction databases
DIP (DOE-UCLA)P62841
IntAct (EBI)P62841
FunCoupENSG00000115268
BioGRIDRPS15
STRING (EMBL)RPS15
ZODIACRPS15
Ontologies - Pathways
QuickGOP62841
Ontology : AmiGOribosomal small subunit assembly  ribosomal small subunit export from nucleus  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  osteoblast differentiation  DNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  poly(A) RNA binding  
Ontology : EGO-EBIribosomal small subunit assembly  ribosomal small subunit export from nucleus  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  osteoblast differentiation  DNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPS15
Atlas of Cancer Signalling NetworkRPS15
Wikipedia pathwaysRPS15
Orthology - Evolution
OrthoDB6209
GeneTree (enSembl)ENSG00000115268
Phylogenetic Trees/Animal Genes : TreeFamRPS15
HOVERGENP62841
HOGENOMP62841
Homologs : HomoloGeneRPS15
Homology/Alignments : Family Browser (UCSC)RPS15
Gene fusions - Rearrangements
Fusion : MitelmanRPS15/PLEC [19p13.3/8q24.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS15
dbVarRPS15
ClinVarRPS15
1000_GenomesRPS15 
Exome Variant ServerRPS15
ExAC (Exome Aggregation Consortium)RPS15 (select the gene name)
Genetic variants : HAPMAP6209
Genomic Variants (DGV)RPS15 [DGVbeta]
DECIPHER (Syndromes)19:1438363-1440496  ENSG00000115268
CONAN: Copy Number AnalysisRPS15 
Mutations
ICGC Data PortalRPS15 
TCGA Data PortalRPS15 
Broad Tumor PortalRPS15
OASIS PortalRPS15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS15
DgiDB (Drug Gene Interaction Database)RPS15
DoCM (Curated mutations)RPS15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS15 (select a term)
intoGenRPS15
Cancer3DRPS15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180535   
Orphanet10899   
MedgenRPS15
Genetic Testing Registry RPS15
NextProtP62841 [Medical]
TSGene6209
GENETestsRPS15
Huge Navigator RPS15 [HugePedia]
snp3D : Map Gene to Disease6209
BioCentury BCIQRPS15
ClinGenRPS15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6209
Chemical/Pharm GKB GenePA34787
Clinical trialRPS15
Miscellaneous
canSAR (ICR)RPS15 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS15
EVEXRPS15
GoPubMedRPS15
iHOPRPS15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:58 CEST 2017

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