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RPS15A (ribosomal protein S15a)

Identity

Alias_symbol (synonym)S15A
Other aliasS15a
HGNC (Hugo) RPS15A
LocusID (NCBI) 6210
Atlas_Id 53827
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18794277 and ends at 18801656 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARL6IP1 (16p12.3) / RPS15A (16p12.3)SPRR3 (1q21.3) / RPS15A (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS15A   10389
Cards
Entrez_Gene (NCBI)RPS15A  6210  ribosomal protein S15a
AliasesS15a
GeneCards (Weizmann)RPS15A
Ensembl hg19 (Hinxton)ENSG00000134419 [Gene_View]  chr16:18794277-18801656 [Contig_View]  RPS15A [Vega]
Ensembl hg38 (Hinxton)ENSG00000134419 [Gene_View]  chr16:18794277-18801656 [Contig_View]  RPS15A [Vega]
ICGC DataPortalENSG00000134419
TCGA cBioPortalRPS15A
AceView (NCBI)RPS15A
Genatlas (Paris)RPS15A
WikiGenes6210
SOURCE (Princeton)RPS15A
Genetics Home Reference (NIH)RPS15A
Genomic and cartography
GoldenPath hg19 (UCSC)RPS15A  -     chr16:18794277-18801656 -  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS15A  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblRPS15A - 16p12.3 [CytoView hg19]  RPS15A - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIRPS15A [Mapview hg19]  RPS15A [Mapview hg38]
OMIM603674   
Gene and transcription
Genbank (Entrez)AB062400 AK023088 AK130967 AK291988 AK311976
RefSeq transcript (Entrez)NM_001019 NM_001030009
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)RPS15A
Cluster EST : UnigeneHs.370504 [ NCBI ]
CGAP (NCI)Hs.370504
Alternative Splicing GalleryENSG00000134419
Gene ExpressionRPS15A [ NCBI-GEO ]   RPS15A [ EBI - ARRAY_EXPRESS ]   RPS15A [ SEEK ]   RPS15A [ MEM ]
Gene Expression Viewer (FireBrowse)RPS15A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6210
GTEX Portal (Tissue expression)RPS15A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62244   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62244  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62244
Splice isoforms : SwissVarP62244
PhosPhoSitePlusP62244
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S8 (PS00053)   
Domains : Interpro (EBI)Ribosomal_S8   
Domain families : Pfam (Sanger)Ribosomal_S8 (PF00410)   
Domain families : Pfam (NCBI)pfam00410   
Conserved Domain (NCBI)RPS15A
DMDM Disease mutations6210
Blocks (Seattle)RPS15A
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX   
SuperfamilyP62244
Human Protein AtlasENSG00000134419
Peptide AtlasP62244
HPRD04723
IPIIPI00221091   
Protein Interaction databases
DIP (DOE-UCLA)P62244
IntAct (EBI)P62244
FunCoupENSG00000134419
BioGRIDRPS15A
STRING (EMBL)RPS15A
ZODIACRPS15A
Ontologies - Pathways
QuickGOP62244
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell proliferation  response to virus  membrane  viral transcription  cytosolic small ribosomal subunit  poly(A) RNA binding  positive regulation of cell cycle  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell proliferation  response to virus  membrane  viral transcription  cytosolic small ribosomal subunit  poly(A) RNA binding  positive regulation of cell cycle  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS15A
Atlas of Cancer Signalling NetworkRPS15A
Wikipedia pathwaysRPS15A
Orthology - Evolution
OrthoDB6210
GeneTree (enSembl)ENSG00000134419
Phylogenetic Trees/Animal Genes : TreeFamRPS15A
HOVERGENP62244
HOGENOMP62244
Homologs : HomoloGeneRPS15A
Homology/Alignments : Family Browser (UCSC)RPS15A
Gene fusions - Rearrangements
Fusion : MitelmanARL6IP1/RPS15A [16p12.3/16p12.3]  [t(16;16)(p12;p12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS15A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS15A
dbVarRPS15A
ClinVarRPS15A
1000_GenomesRPS15A 
Exome Variant ServerRPS15A
ExAC (Exome Aggregation Consortium)RPS15A (select the gene name)
Genetic variants : HAPMAP6210
Genomic Variants (DGV)RPS15A [DGVbeta]
DECIPHER (Syndromes)16:18794277-18801656  ENSG00000134419
CONAN: Copy Number AnalysisRPS15A 
Mutations
ICGC Data PortalRPS15A 
TCGA Data PortalRPS15A 
Broad Tumor PortalRPS15A
OASIS PortalRPS15A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS15A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS15A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RPS15A
DgiDB (Drug Gene Interaction Database)RPS15A
DoCM (Curated mutations)RPS15A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS15A (select a term)
intoGenRPS15A
Cancer3DRPS15A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603674   
Orphanet
MedgenRPS15A
Genetic Testing Registry RPS15A
NextProtP62244 [Medical]
TSGene6210
GENETestsRPS15A
Huge Navigator RPS15A [HugePedia]
snp3D : Map Gene to Disease6210
BioCentury BCIQRPS15A
ClinGenRPS15A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6210
Chemical/Pharm GKB GenePA34788
Clinical trialRPS15A
Miscellaneous
canSAR (ICR)RPS15A (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS15A
EVEXRPS15A
GoPubMedRPS15A
iHOPRPS15A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:17:58 CEST 2017

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