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RPS16 (ribosomal protein S16)

Identity

Alias (NCBI)S16
HGNC (Hugo) RPS16
HGNC Alias symbS16
HGNC Alias name40S ribosomal protein S16
LocusID (NCBI) 6217
Atlas_Id 54593
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39433137 and ends at 39435949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTB (7p22.1) / RPS16 (19q13.2)LRRC38 (1p36.21) / RPS16 (19q13.2)RPL19 (17q12) / RPS16 (19q13.2)
RPS16 (19q13.2) / CCND1 (11q13.3)RPS16 (19q13.2) / FBL (19q13.2)RPS16 (19q13.2) / FGA (4q31.3)
RPS16 (19q13.2) / GABARAPL1 (12p13.2)RPS16 (19q13.2) / HIST1H1C (6p22.2)RPS16 (19q13.2) / MCM5 (22q12.3)
RPS16 (19q13.2) / NOL7 (6p23)RPS16 (19q13.2) / UBD (6p22.1)TMSB10 (2p11.2) / RPS16 (19q13.2)
ZFAS1 (20q13.13) / RPS16 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(2;19)(p11;q13) TMSB10/RPS16
t(17;19)(q12;q13) RPL19/RPS16


External links

Nomenclature
HGNC (Hugo)RPS16   10396
Cards
Entrez_Gene (NCBI)RPS16  6217  ribosomal protein S16
AliasesS16
GeneCards (Weizmann)RPS16
Ensembl hg19 (Hinxton)ENSG00000105193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105193 [Gene_View]  ENSG00000105193 [Sequence]  chr19:39433137-39435949 [Contig_View]  RPS16 [Vega]
ICGC DataPortalENSG00000105193
TCGA cBioPortalRPS16
AceView (NCBI)RPS16
Genatlas (Paris)RPS16
WikiGenes6217
SOURCE (Princeton)RPS16
Genetics Home Reference (NIH)RPS16
Genomic and cartography
GoldenPath hg38 (UCSC)RPS16  -     chr19:39433137-39435949 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS16  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathRPS16 - 19q13.2 [CytoView hg19]  RPS16 - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000105193
genome Data Viewer NCBIRPS16 [Mapview hg19]  
OMIM603675   
Gene and transcription
Genbank (Entrez)AA890305 AK055869 AK315498 BC004324 BC007977
RefSeq transcript (Entrez)NM_001020 NM_001321111 NM_001363860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS16
Alternative Splicing GalleryENSG00000105193
Gene ExpressionRPS16 [ NCBI-GEO ]   RPS16 [ EBI - ARRAY_EXPRESS ]   RPS16 [ SEEK ]   RPS16 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS16 [ Firebrowse - Broad ]
GenevisibleExpression of RPS16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6217
GTEX Portal (Tissue expression)RPS16
Human Protein AtlasENSG00000105193-RPS16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62249   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62249  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62249
Splice isoforms : SwissVarP62249
PhosPhoSitePlusP62249
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S9 (PS00360)   
Domains : Interpro (EBI)Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr    Ribosomal_S9    Ribosomal_S9_CS   
Domain families : Pfam (Sanger)Ribosomal_S9 (PF00380)   
Domain families : Pfam (NCBI)pfam00380   
Conserved Domain (NCBI)RPS16
DMDM Disease mutations6217
Blocks (Seattle)RPS16
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB Europe4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
SuperfamilyP62249
Human Protein Atlas [tissue]ENSG00000105193-RPS16 [tissue]
Peptide AtlasP62249
HPRD04724
IPIIPI00221092   IPI00450975   
Protein Interaction databases
DIP (DOE-UCLA)P62249
IntAct (EBI)P62249
FunCoupENSG00000105193
BioGRIDRPS16
STRING (EMBL)RPS16
ZODIACRPS16
Ontologies - Pathways
QuickGOP62249
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  small ribosomal subunit  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  small ribosomal subunit  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS16
Atlas of Cancer Signalling NetworkRPS16
Wikipedia pathwaysRPS16
Orthology - Evolution
OrthoDB6217
GeneTree (enSembl)ENSG00000105193
Phylogenetic Trees/Animal Genes : TreeFamRPS16
HOGENOMP62249
Homologs : HomoloGeneRPS16
Homology/Alignments : Family Browser (UCSC)RPS16
Gene fusions - Rearrangements
Fusion : MitelmanRPL19/RPS16 [17q12/19q13.2]  
Fusion : MitelmanTMSB10/RPS16 [2p11.2/19q13.2]  
Fusion : QuiverRPS16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS16
dbVarRPS16
ClinVarRPS16
1000_GenomesRPS16 
Exome Variant ServerRPS16
GNOMAD BrowserENSG00000105193
Varsome BrowserRPS16
Genetic variants : HAPMAP6217
Genomic Variants (DGV)RPS16 [DGVbeta]
DECIPHERRPS16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS16 
Mutations
ICGC Data PortalRPS16 
TCGA Data PortalRPS16 
Broad Tumor PortalRPS16
OASIS PortalRPS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPS16
Mutations and Diseases : HGMDRPS16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS16
DgiDB (Drug Gene Interaction Database)RPS16
DoCM (Curated mutations)RPS16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS16 (select a term)
intoGenRPS16
Cancer3DRPS16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603675   
Orphanet
DisGeNETRPS16
MedgenRPS16
Genetic Testing Registry RPS16
NextProtP62249 [Medical]
TSGene6217
GENETestsRPS16
Target ValidationRPS16
Huge Navigator RPS16 [HugePedia]
snp3D : Map Gene to Disease6217
BioCentury BCIQRPS16
ClinGenRPS16
Clinical trials, drugs, therapy
Protein Interactions : CTD6217
Pharm GKB GenePA34796
Clinical trialRPS16
Miscellaneous
canSAR (ICR)RPS16 (select the gene name)
HarmonizomeRPS16
DataMed IndexRPS16
Probes
Litterature
PubMed132 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS16
EVEXRPS16
GoPubMedRPS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:34:04 CEST 2020

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