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RPS16 (ribosomal protein S16)

Identity

Alias (NCBI)S16
HGNC (Hugo) RPS16
HGNC Alias symbS16
HGNC Alias name40S ribosomal protein S16
LocusID (NCBI) 6217
Atlas_Id 54593
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39433137 and ends at 39435949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTB (7p22.1)::RPS16 (19q13.2)LRRC38 (1p36.21)::RPS16 (19q13.2)RPL19 (17q12)::RPS16 (19q13.2)
RPS16 (19q13.2)::CCND1 (11q13.3)RPS16 (19q13.2)::FBL (19q13.2)RPS16 (19q13.2)::FGA (4q31.3)
RPS16 (19q13.2)::GABARAPL1 (12p13.2)RPS16 (19q13.2)::HIST1H1C (6p22.2)RPS16 (19q13.2)::MCM5 (22q12.3)
RPS16 (19q13.2)::NOL7 (6p23)RPS16 (19q13.2)::UBD (6p22.1)TMSB10 (2p11.2)::RPS16 (19q13.2)
ZFAS1 (20q13.13)::RPS16 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPS16   10396
Cards
Entrez_Gene (NCBI)RPS16    ribosomal protein S16
AliasesS16
GeneCards (Weizmann)RPS16
Ensembl hg19 (Hinxton)ENSG00000105193 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105193 [Gene_View]  ENSG00000105193 [Sequence]  chr19:39433137-39435949 [Contig_View]  RPS16 [Vega]
ICGC DataPortalENSG00000105193
TCGA cBioPortalRPS16
AceView (NCBI)RPS16
Genatlas (Paris)RPS16
SOURCE (Princeton)RPS16
Genetics Home Reference (NIH)RPS16
Genomic and cartography
GoldenPath hg38 (UCSC)RPS16  -     chr19:39433137-39435949 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS16  -     19q13.2   [Description]    (hg19-Feb_2009)
GoldenPathRPS16 - 19q13.2 [CytoView hg19]  RPS16 - 19q13.2 [CytoView hg38]
ImmunoBaseENSG00000105193
Genome Data Viewer NCBIRPS16 [Mapview hg19]  
OMIM603675   
Gene and transcription
Genbank (Entrez)AA890305 AK055869 AK315498 BC004324 BC007977
RefSeq transcript (Entrez)NM_001020 NM_001321111 NM_001363860
Consensus coding sequences : CCDS (NCBI)RPS16
Gene ExpressionRPS16 [ NCBI-GEO ]   RPS16 [ EBI - ARRAY_EXPRESS ]   RPS16 [ SEEK ]   RPS16 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS16 [ Firebrowse - Broad ]
GenevisibleExpression of RPS16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6217
GTEX Portal (Tissue expression)RPS16
Human Protein AtlasENSG00000105193-RPS16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62249   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62249  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62249
PhosPhoSitePlusP62249
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S9 (PS00360)   
Domains : Interpro (EBI)Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr    Ribosomal_S9    Ribosomal_S9_CS   
Domain families : Pfam (Sanger)Ribosomal_S9 (PF00380)   
Domain families : Pfam (NCBI)pfam00380   
Conserved Domain (NCBI)RPS16
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB Europe4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBS    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOL    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
SuperfamilyP62249
AlphaFold pdb e-kbP62249   
Human Protein Atlas [tissue]ENSG00000105193-RPS16 [tissue]
HPRD04724
Protein Interaction databases
DIP (DOE-UCLA)P62249
IntAct (EBI)P62249
BioGRIDRPS16
STRING (EMBL)RPS16
ZODIACRPS16
Ontologies - Pathways
QuickGOP62249
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cytoplasmic translation  RNA binding  RNA binding  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  small ribosomal subunit  small ribosomal subunit  membrane  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  extracellular exosome  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cytoplasmic translation  RNA binding  RNA binding  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  small ribosomal subunit  small ribosomal subunit  membrane  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosomal small subunit biogenesis  extracellular exosome  cellular response to leukemia inhibitory factor  
Pathways : KEGGKEGG_RIBOSOME   
NDEx NetworkRPS16
Atlas of Cancer Signalling NetworkRPS16
Wikipedia pathwaysRPS16
Orthology - Evolution
OrthoDB6217
GeneTree (enSembl)ENSG00000105193
Phylogenetic Trees/Animal Genes : TreeFamRPS16
Homologs : HomoloGeneRPS16
Homology/Alignments : Family Browser (UCSC)RPS16
Gene fusions - Rearrangements
Fusion : MitelmanRPL19::RPS16 [17q12/19q13.2]  
Fusion : MitelmanTMSB10::RPS16 [2p11.2/19q13.2]  
Fusion : QuiverRPS16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS16
dbVarRPS16
ClinVarRPS16
MonarchRPS16
1000_GenomesRPS16 
Exome Variant ServerRPS16
GNOMAD BrowserENSG00000105193
Varsome BrowserRPS16
ACMGRPS16 variants
VarityP62249
Genomic Variants (DGV)RPS16 [DGVbeta]
DECIPHERRPS16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS16 
Mutations
ICGC Data PortalRPS16 
TCGA Data PortalRPS16 
Broad Tumor PortalRPS16
OASIS PortalRPS16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPS16
Mutations and Diseases : HGMDRPS16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPS16
DgiDB (Drug Gene Interaction Database)RPS16
DoCM (Curated mutations)RPS16
CIViC (Clinical Interpretations of Variants in Cancer)RPS16
Cancer3DRPS16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603675   
Orphanet
DisGeNETRPS16
MedgenRPS16
Genetic Testing Registry RPS16
NextProtP62249 [Medical]
GENETestsRPS16
Target ValidationRPS16
Huge Navigator RPS16 [HugePedia]
ClinGenRPS16
Clinical trials, drugs, therapy
MyCancerGenomeRPS16
Protein Interactions : CTDRPS16
Pharm GKB GenePA34796
PharosP62249
Clinical trialRPS16
Miscellaneous
canSAR (ICR)RPS16
HarmonizomeRPS16
ARCHS4RPS16
DataMed IndexRPS16
Probes
Litterature
PubMed174 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPS16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:56:52 CET 2022

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