Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS17 (ribosomal protein S17)

Identity

Alias_namesRPS17L
ribosomal protein S17-like
Alias_symbol (synonym)RPS17L1
RPS17L2
MGC72007
S17
Other aliasDBA4
HGNC (Hugo) RPS17
LocusID (NCBI) 6218
Atlas_Id 72858
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82536750 and ends at 82540544 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTBD2 (19p13.3) / RPS17 (15q25.2)PRKAR1A (17q24.2) / RPS17 (15q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS17   10397
Cards
Entrez_Gene (NCBI)RPS17  6218  ribosomal protein S17
AliasesDBA4; RPS17L; RPS17L1; RPS17L2; 
S17
GeneCards (Weizmann)RPS17
Ensembl hg19 (Hinxton)ENSG00000182774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182774 [Gene_View]  chr15:82536750-82540544 [Contig_View]  RPS17 [Vega]
ICGC DataPortalENSG00000182774
TCGA cBioPortalRPS17
AceView (NCBI)RPS17
Genatlas (Paris)RPS17
WikiGenes6218
SOURCE (Princeton)RPS17
Genetics Home Reference (NIH)RPS17
Genomic and cartography
GoldenPath hg38 (UCSC)RPS17  -     chr15:82536750-82540544 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS17  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblRPS17 - 15q25.2 [CytoView hg19]  RPS17 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIRPS17 [Mapview hg19]  RPS17 [Mapview hg38]
OMIM180472   612527   
Gene and transcription
Genbank (Entrez)AB055777 AK311951 BC009407 BC019899 BC020453
RefSeq transcript (Entrez)NM_001021 NM_001199057
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_009890 NT_187606
Consensus coding sequences : CCDS (NCBI)RPS17
Cluster EST : UnigeneHs.512525 [ NCBI ]
CGAP (NCI)Hs.512525
Alternative Splicing GalleryENSG00000182774
Gene ExpressionRPS17 [ NCBI-GEO ]   RPS17 [ EBI - ARRAY_EXPRESS ]   RPS17 [ SEEK ]   RPS17 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6218
GTEX Portal (Tissue expression)RPS17
Human Protein AtlasENSG00000182774-RPS17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08708   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08708  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08708
Splice isoforms : SwissVarP08708
PhosPhoSitePlusP08708
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S17E (PS00712)   
Domains : Interpro (EBI)Ribosomal_S17e    Ribosomal_S17e_CS   
Domain families : Pfam (Sanger)Ribosomal_S17e (PF00833)   
Domain families : Pfam (NCBI)pfam00833   
Conserved Domain (NCBI)RPS17
DMDM Disease mutations6218
Blocks (Seattle)RPS17
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP08708
Human Protein Atlas [tissue]ENSG00000182774-RPS17 [tissue]
Peptide AtlasP08708
HPRD01600
IPIIPI00221093   
Protein Interaction databases
DIP (DOE-UCLA)P08708
IntAct (EBI)P08708
FunCoupENSG00000182774
BioGRIDRPS17
STRING (EMBL)RPS17
ZODIACRPS17
Ontologies - Pathways
QuickGOP08708
Ontology : AmiGOribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  cytosol  ribosome  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  extracellular matrix  erythrocyte homeostasis  ribosomal small subunit biogenesis  extracellular exosome  
Ontology : EGO-EBIribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  cytosol  ribosome  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  extracellular matrix  erythrocyte homeostasis  ribosomal small subunit biogenesis  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS17
Atlas of Cancer Signalling NetworkRPS17
Wikipedia pathwaysRPS17
Orthology - Evolution
OrthoDB6218
GeneTree (enSembl)ENSG00000182774
Phylogenetic Trees/Animal Genes : TreeFamRPS17
HOVERGENP08708
HOGENOMP08708
Homologs : HomoloGeneRPS17
Homology/Alignments : Family Browser (UCSC)RPS17
Gene fusions - Rearrangements
Tumor Fusion PortalRPS17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS17
dbVarRPS17
ClinVarRPS17
1000_GenomesRPS17 
Exome Variant ServerRPS17
ExAC (Exome Aggregation Consortium)ENSG00000182774
GNOMAD BrowserENSG00000182774
Genetic variants : HAPMAP6218
Genomic Variants (DGV)RPS17 [DGVbeta]
DECIPHERRPS17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS17 
Mutations
ICGC Data PortalRPS17 
TCGA Data PortalRPS17 
Broad Tumor PortalRPS17
OASIS PortalRPS17 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPS17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPS17
DgiDB (Drug Gene Interaction Database)RPS17
DoCM (Curated mutations)RPS17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS17 (select a term)
intoGenRPS17
Cancer3DRPS17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180472    612527   
Orphanet429   
DisGeNETRPS17
MedgenRPS17
Genetic Testing Registry RPS17
NextProtP08708 [Medical]
TSGene6218
GENETestsRPS17
Target ValidationRPS17
Huge Navigator RPS17 [HugePedia]
snp3D : Map Gene to Disease6218
BioCentury BCIQRPS17
ClinGenRPS17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6218
Chemical/Pharm GKB GenePA34797
Clinical trialRPS17
Miscellaneous
canSAR (ICR)RPS17 (select the gene name)
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS17
EVEXRPS17
GoPubMedRPS17
iHOPRPS17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:08 CET 2017

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