Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS17 (ribosomal protein S17)

Identity

Alias (NCBI)DBA4
RPS17L
RPS17L1
RPS17L2
S17
HGNC (Hugo) RPS17
HGNC Alias symbRPS17L1
RPS17L2
MGC72007
S17
HGNC Previous nameRPS17L
HGNC Previous nameribosomal protein S17-like
LocusID (NCBI) 6218
Atlas_Id 72858
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82536750 and ends at 82540457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BTBD2 (19p13.3) / RPS17 (15q25.2)PRKAR1A (17q24.2) / RPS17 (15q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS17   10397
Cards
Entrez_Gene (NCBI)RPS17  6218  ribosomal protein S17
AliasesDBA4; RPS17L; RPS17L1; RPS17L2; 
S17
GeneCards (Weizmann)RPS17
Ensembl hg19 (Hinxton)ENSG00000182774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182774 [Gene_View]  ENSG00000182774 [Sequence]  chr15:82536750-82540457 [Contig_View]  RPS17 [Vega]
ICGC DataPortalENSG00000182774
TCGA cBioPortalRPS17
AceView (NCBI)RPS17
Genatlas (Paris)RPS17
WikiGenes6218
SOURCE (Princeton)RPS17
Genetics Home Reference (NIH)RPS17
Genomic and cartography
GoldenPath hg38 (UCSC)RPS17  -     chr15:82536750-82540457 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS17  -     15q25.2   [Description]    (hg19-Feb_2009)
GoldenPathRPS17 - 15q25.2 [CytoView hg19]  RPS17 - 15q25.2 [CytoView hg38]
ImmunoBaseENSG00000182774
genome Data Viewer NCBIRPS17 [Mapview hg19]  
OMIM180472   612527   
Gene and transcription
Genbank (Entrez)AB055777 AK311951 BC009407 BC019899 BC020453
RefSeq transcript (Entrez)NM_001021 NM_001199057
RefSeq genomic (Entrez)NC_000015 NG_009890 NT_187606
Consensus coding sequences : CCDS (NCBI)RPS17
Alternative Splicing GalleryENSG00000182774
Gene ExpressionRPS17 [ NCBI-GEO ]   RPS17 [ EBI - ARRAY_EXPRESS ]   RPS17 [ SEEK ]   RPS17 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS17 [ Firebrowse - Broad ]
GenevisibleExpression of RPS17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6218
GTEX Portal (Tissue expression)RPS17
Human Protein AtlasENSG00000182774-RPS17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08708   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08708  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08708
Splice isoforms : SwissVarP08708
PhosPhoSitePlusP08708
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S17E (PS00712)   
Domains : Interpro (EBI)Ribosomal_S17e    Ribosomal_S17e_CS    RPS17e-like_sf   
Domain families : Pfam (Sanger)Ribosomal_S17e (PF00833)   
Domain families : Pfam (NCBI)pfam00833   
Conserved Domain (NCBI)RPS17
DMDM Disease mutations6218
Blocks (Seattle)RPS17
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB Europe4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP   
SuperfamilyP08708
Human Protein Atlas [tissue]ENSG00000182774-RPS17 [tissue]
Peptide AtlasP08708
HPRD01600
IPIIPI00221093   
Protein Interaction databases
DIP (DOE-UCLA)P08708
IntAct (EBI)P08708
FunCoupENSG00000182774
BioGRIDRPS17
STRING (EMBL)RPS17
ZODIACRPS17
Ontologies - Pathways
QuickGOP08708
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  erythrocyte homeostasis  ribosomal small subunit biogenesis  synapse  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  erythrocyte homeostasis  ribosomal small subunit biogenesis  synapse  
Pathways : KEGGRibosome   
NDEx NetworkRPS17
Atlas of Cancer Signalling NetworkRPS17
Wikipedia pathwaysRPS17
Orthology - Evolution
OrthoDB6218
GeneTree (enSembl)ENSG00000182774
Phylogenetic Trees/Animal Genes : TreeFamRPS17
HOGENOMP08708
Homologs : HomoloGeneRPS17
Homology/Alignments : Family Browser (UCSC)RPS17
Gene fusions - Rearrangements
Fusion : QuiverRPS17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS17
dbVarRPS17
ClinVarRPS17
1000_GenomesRPS17 
Exome Variant ServerRPS17
GNOMAD BrowserENSG00000182774
Varsome BrowserRPS17
Genetic variants : HAPMAP6218
Genomic Variants (DGV)RPS17 [DGVbeta]
DECIPHERRPS17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS17 
Mutations
ICGC Data PortalRPS17 
TCGA Data PortalRPS17 
Broad Tumor PortalRPS17
OASIS PortalRPS17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPS17
Mutations and Diseases : HGMDRPS17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPS17
DgiDB (Drug Gene Interaction Database)RPS17
DoCM (Curated mutations)RPS17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS17 (select a term)
intoGenRPS17
Cancer3DRPS17(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180472    612527   
Orphanet429   
DisGeNETRPS17
MedgenRPS17
Genetic Testing Registry RPS17
NextProtP08708 [Medical]
TSGene6218
GENETestsRPS17
Target ValidationRPS17
Huge Navigator RPS17 [HugePedia]
snp3D : Map Gene to Disease6218
BioCentury BCIQRPS17
ClinGenRPS17
Clinical trials, drugs, therapy
Protein Interactions : CTD6218
Pharm GKB GenePA34797
Clinical trialRPS17
Miscellaneous
canSAR (ICR)RPS17 (select the gene name)
HarmonizomeRPS17
DataMed IndexRPS17
Probes
Litterature
PubMed118 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS17
EVEXRPS17
GoPubMedRPS17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:26:18 CEST 2020

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