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RPS18 (ribosomal protein S18)

Identity

Alias_namesD6S218E
Alias_symbol (synonym)KE3
KE-3
HKE3
S18
Other alias
HGNC (Hugo) RPS18
LocusID (NCBI) 6222
Atlas_Id 72859
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33272075 and ends at 33276504 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5G3 (2q31.1) / RPS18 (6p21.32)OGFOD1 (16q12.2) / RPS18 (6p21.32)OSBPL1A (18q11.2) / RPS18 (6p21.32)
RPS18 (6p21.32) / MAK16 (8p12)RPS18 (6p21.32) / RPS18 (6p21.32)SCYL1 (11q13.1) / RPS18 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS18   10401
Cards
Entrez_Gene (NCBI)RPS18  6222  ribosomal protein S18
AliasesD6S218E; HKE3; KE-3; KE3; 
S18
GeneCards (Weizmann)RPS18
Ensembl hg19 (Hinxton)ENSG00000231500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231500 [Gene_View]  chr6:33272075-33276504 [Contig_View]  RPS18 [Vega]
ICGC DataPortalENSG00000231500
TCGA cBioPortalRPS18
AceView (NCBI)RPS18
Genatlas (Paris)RPS18
WikiGenes6222
SOURCE (Princeton)RPS18
Genetics Home Reference (NIH)RPS18
Genomic and cartography
GoldenPath hg38 (UCSC)RPS18  -     chr6:33272075-33276504 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS18  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblRPS18 - 6p21.32 [CytoView hg19]  RPS18 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIRPS18 [Mapview hg19]  RPS18 [Mapview hg38]
OMIM180473   
Gene and transcription
Genbank (Entrez)AB055778 AY536376 BC070230 BC101786 BC101788
RefSeq transcript (Entrez)NM_022551
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)RPS18
Cluster EST : UnigeneHs.627414 [ NCBI ]
CGAP (NCI)Hs.627414
Alternative Splicing GalleryENSG00000231500
Gene ExpressionRPS18 [ NCBI-GEO ]   RPS18 [ EBI - ARRAY_EXPRESS ]   RPS18 [ SEEK ]   RPS18 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6222
GTEX Portal (Tissue expression)RPS18
Human Protein AtlasENSG00000231500-RPS18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62269   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62269  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62269
Splice isoforms : SwissVarP62269
PhosPhoSitePlusP62269
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S13_1 (PS00646)    RIBOSOMAL_S13_2 (PS50159)   
Domains : Interpro (EBI)30s_Rbsml_prot_S13_C    Ribosomal_S13    Ribosomal_S13-like_H2TH    Ribosomal_S13_CS   
Domain families : Pfam (Sanger)Ribosomal_S13 (PF00416)   
Domain families : Pfam (NCBI)pfam00416   
Conserved Domain (NCBI)RPS18
DMDM Disease mutations6222
Blocks (Seattle)RPS18
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62269
Human Protein Atlas [tissue]ENSG00000231500-RPS18 [tissue]
Peptide AtlasP62269
HPRD01601
IPIIPI00013296   
Protein Interaction databases
DIP (DOE-UCLA)P62269
IntAct (EBI)P62269
FunCoupENSG00000231500
BioGRIDRPS18
STRING (EMBL)RPS18
ZODIACRPS18
Ontologies - Pathways
QuickGOP62269
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
Pathways : KEGGRibosome   
NDEx NetworkRPS18
Atlas of Cancer Signalling NetworkRPS18
Wikipedia pathwaysRPS18
Orthology - Evolution
OrthoDB6222
GeneTree (enSembl)ENSG00000231500
Phylogenetic Trees/Animal Genes : TreeFamRPS18
HOVERGENP62269
HOGENOMP62269
Homologs : HomoloGeneRPS18
Homology/Alignments : Family Browser (UCSC)RPS18
Gene fusions - Rearrangements
Fusion : QuiverRPS18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS18
dbVarRPS18
ClinVarRPS18
1000_GenomesRPS18 
Exome Variant ServerRPS18
ExAC (Exome Aggregation Consortium)ENSG00000231500
GNOMAD BrowserENSG00000231500
Genetic variants : HAPMAP6222
Genomic Variants (DGV)RPS18 [DGVbeta]
DECIPHERRPS18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS18 
Mutations
ICGC Data PortalRPS18 
TCGA Data PortalRPS18 
Broad Tumor PortalRPS18
OASIS PortalRPS18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS18
DgiDB (Drug Gene Interaction Database)RPS18
DoCM (Curated mutations)RPS18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS18 (select a term)
intoGenRPS18
Cancer3DRPS18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180473   
Orphanet
DisGeNETRPS18
MedgenRPS18
Genetic Testing Registry RPS18
NextProtP62269 [Medical]
TSGene6222
GENETestsRPS18
Target ValidationRPS18
Huge Navigator RPS18 [HugePedia]
snp3D : Map Gene to Disease6222
BioCentury BCIQRPS18
ClinGenRPS18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6222
Chemical/Pharm GKB GenePA34801
Clinical trialRPS18
Miscellaneous
canSAR (ICR)RPS18 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS18
EVEXRPS18
GoPubMedRPS18
iHOPRPS18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:50:15 CET 2018

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