Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS19 (ribosomal protein S19)

Identity

Other namesDBA
DBA1
S19
HGNC (Hugo) RPS19
LocusID (NCBI) 6223
Location 19q13.2
Location_base_pair Starts at 42363988 and ends at 42375484 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPS19   10402
Cards
Entrez_Gene (NCBI)RPS19  6223  ribosomal protein S19
GeneCards (Weizmann)RPS19
Ensembl (Hinxton)ENSG00000105372 [Gene_View]  chr19:42363988-42375484 [Contig_View]  RPS19 [Vega]
ICGC DataPortalENSG00000105372
cBioPortalRPS19
AceView (NCBI)RPS19
Genatlas (Paris)RPS19
WikiGenes6223
SOURCE (Princeton)NM_001022
Genomic and cartography
GoldenPath (UCSC)RPS19  -  19q13.2   chr19:42363988-42375484 +  19q13.2   [Description]    (hg19-Feb_2009)
EnsemblRPS19 - 19q13.2 [CytoView]
Mapping of homologs : NCBIRPS19 [Mapview]
OMIM105650   603474   
Gene and transcription
Genbank (Entrez)AK311786 BC000023 BC007615 BC017386 BC018616
RefSeq transcript (Entrez)NM_001022
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_007080 NT_011109 NW_001838496 NW_004929415
Consensus coding sequences : CCDS (NCBI)RPS19
Cluster EST : UnigeneHs.438429 [ NCBI ]
CGAP (NCI)Hs.438429
Alternative Splicing : Fast-db (Paris)GSHG0014953
Alternative Splicing GalleryENSG00000105372
Gene ExpressionRPS19 [ NCBI-GEO ]     RPS19 [ SEEK ]   RPS19 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP39019 (Uniprot)
NextProtP39019  [Medical]
With graphics : InterProP39019
Splice isoforms : SwissVarP39019 (Swissvar)
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S19E (PS00628)   
Domains : Interpro (EBI)Ribosomal_S19e [organisation]   Ribosomal_S19e_CS [organisation]  
Related proteins : CluSTrP39019
Domain families : Pfam (Sanger)Ribosomal_S19e (PF01090)   
Domain families : Pfam (NCBI)pfam01090   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S19e (PD003854)   
DMDM Disease mutations6223
Blocks (Seattle)P39019
PDB (SRS)3J3A   
PDB (PDBSum)3J3A   
PDB (IMB)3J3A   
PDB (RSDB)3J3A   
Human Protein AtlasENSG00000105372 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP39019
HPRD04591
IPIIPI00215780   
Protein Interaction databases
DIP (DOE-UCLA)P39019
IntAct (EBI)P39019
FunCoupENSG00000105372
BioGRIDRPS19
InParanoidP39019
Interologous Interaction database P39019
IntegromeDBRPS19
STRING (EMBL)RPS19
Ontologies - Pathways
Ontology : AmiGOribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  monocyte chemotaxis  structural constituent of ribosome  protein binding  nucleolus  cytoplasm  cytosol  cytosol  ribosome  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  nucleolus organization  response to extracellular stimulus  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  fibroblast growth factor binding  viral life cycle  viral transcription  protein kinase binding  cytosolic small ribosomal subunit  erythrocyte differentiation  maturation of SSU-rRNA  ribosomal small subunit biogenesis  protein homodimerization activity  cellular protein metabolic process  poly(A) RNA binding  protein tetramerization  positive regulation of cellular component movement  positive regulation of respiratory burst involved in inflammatory response  negative regulation of respiratory burst involved in inflammatory response  extracellular vesicular exosome  
Ontology : EGO-EBIribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  monocyte chemotaxis  structural constituent of ribosome  protein binding  nucleolus  cytoplasm  cytosol  cytosol  ribosome  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  nucleolus organization  response to extracellular stimulus  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  fibroblast growth factor binding  viral life cycle  viral transcription  protein kinase binding  cytosolic small ribosomal subunit  erythrocyte differentiation  maturation of SSU-rRNA  ribosomal small subunit biogenesis  protein homodimerization activity  cellular protein metabolic process  poly(A) RNA binding  protein tetramerization  positive regulation of cellular component movement  positive regulation of respiratory burst involved in inflammatory response  negative regulation of respiratory burst involved in inflammatory response  extracellular vesicular exosome  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPS19
Wikipedia pathwaysRPS19
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPS19
snp3D : Map Gene to Disease6223
SNP (GeneSNP Utah)RPS19
SNP : HGBaseRPS19
Genetic variants : HAPMAPRPS19
Exome VariantRPS19
1000_GenomesRPS19 
ICGC programENSG00000105372 
Somatic Mutations in Cancer : COSMICRPS19 
CONAN: Copy Number AnalysisRPS19 
Mutations and Diseases : HGMDRPS19
Genomic VariantsRPS19  RPS19 [DGVbeta]
dbVarRPS19
ClinVarRPS19
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM105650    603474   
MedgenRPS19
GENETestsRPS19
Disease Genetic AssociationRPS19
Huge Navigator RPS19 [HugePedia]  RPS19 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRPS19
Homology/Alignments : Family Browser (UCSC)RPS19
Phylogenetic Trees/Animal Genes : TreeFamRPS19
Chemical/Protein Interactions : CTD6223
Chemical/Pharm GKB GenePA34803
Clinical trialRPS19
Cancer Resource (Charite)ENSG00000105372
Other databases
Probes
Litterature
PubMed111 Pubmed reference(s) in Entrez
CoreMineRPS19
iHOPRPS19
OncoSearchRPS19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:13:46 CEST 2014

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