Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS19BP1 (ribosomal protein S19 binding protein 1)

Identity

Alias_symbol (synonym)MGC52010
FLJ21770
Other aliasAROS
S19BP
HGNC (Hugo) RPS19BP1
LocusID (NCBI) 91582
Atlas_Id 53979
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39529093 and ends at 39532855 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JOSD1 (22q13.1) / RPS19BP1 (22q13.1)RPS19BP1 (22q13.1) / C3 (19p13.3)RPS19BP1 (22q13.1) / KCNE1 (21q22.12)
RPS19BP1 22q13.1 / KCNE1 21q22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS19BP1   28749
Cards
Entrez_Gene (NCBI)RPS19BP1  91582  ribosomal protein S19 binding protein 1
AliasesAROS; S19BP
GeneCards (Weizmann)RPS19BP1
Ensembl hg19 (Hinxton)ENSG00000187051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187051 [Gene_View]  chr22:39529093-39532855 [Contig_View]  RPS19BP1 [Vega]
ICGC DataPortalENSG00000187051
TCGA cBioPortalRPS19BP1
AceView (NCBI)RPS19BP1
Genatlas (Paris)RPS19BP1
WikiGenes91582
SOURCE (Princeton)RPS19BP1
Genetics Home Reference (NIH)RPS19BP1
Genomic and cartography
GoldenPath hg38 (UCSC)RPS19BP1  -     chr22:39529093-39532855 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS19BP1  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblRPS19BP1 - 22q13.1 [CytoView hg19]  RPS19BP1 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIRPS19BP1 [Mapview hg19]  RPS19BP1 [Mapview hg38]
OMIM610225   
Gene and transcription
Genbank (Entrez)AK025423 AK055865 BC037573 BC047711 BQ675376
RefSeq transcript (Entrez)NM_194326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS19BP1
Cluster EST : UnigeneHs.526933 [ NCBI ]
CGAP (NCI)Hs.526933
Alternative Splicing GalleryENSG00000187051
Gene ExpressionRPS19BP1 [ NCBI-GEO ]   RPS19BP1 [ EBI - ARRAY_EXPRESS ]   RPS19BP1 [ SEEK ]   RPS19BP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS19BP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91582
GTEX Portal (Tissue expression)RPS19BP1
Human Protein AtlasENSG00000187051-RPS19BP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WX3
Splice isoforms : SwissVarQ86WX3
PhosPhoSitePlusQ86WX3
Domains : Interpro (EBI)AROS   
Domain families : Pfam (Sanger)AROS (PF15684)   
Domain families : Pfam (NCBI)pfam15684   
Conserved Domain (NCBI)RPS19BP1
DMDM Disease mutations91582
Blocks (Seattle)RPS19BP1
SuperfamilyQ86WX3
Human Protein Atlas [tissue]ENSG00000187051-RPS19BP1 [tissue]
Peptide AtlasQ86WX3
HPRD14674
IPIIPI00219006   IPI00979692   IPI00880106   
Protein Interaction databases
DIP (DOE-UCLA)Q86WX3
IntAct (EBI)Q86WX3
FunCoupENSG00000187051
BioGRIDRPS19BP1
STRING (EMBL)RPS19BP1
ZODIACRPS19BP1
Ontologies - Pathways
QuickGOQ86WX3
Ontology : AmiGORNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  cytosol  enzyme binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  cytosol  enzyme binding  
NDEx NetworkRPS19BP1
Atlas of Cancer Signalling NetworkRPS19BP1
Wikipedia pathwaysRPS19BP1
Orthology - Evolution
OrthoDB91582
GeneTree (enSembl)ENSG00000187051
Phylogenetic Trees/Animal Genes : TreeFamRPS19BP1
HOVERGENQ86WX3
HOGENOMQ86WX3
Homologs : HomoloGeneRPS19BP1
Homology/Alignments : Family Browser (UCSC)RPS19BP1
Gene fusions - Rearrangements
Fusion : MitelmanJOSD1/RPS19BP1 [22q13.1/22q13.1]  [t(22;22)(q13;q13)]  
Fusion : MitelmanRPS19BP1/KCNE1 [22q13.1/21q22.12]  [t(21;22)(q22;q13)]  
Fusion: TCGARPS19BP1 22q13.1 KCNE1 21q22.12 BRCA
Fusion: Tumor Portal RPS19BP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS19BP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS19BP1
dbVarRPS19BP1
ClinVarRPS19BP1
1000_GenomesRPS19BP1 
Exome Variant ServerRPS19BP1
ExAC (Exome Aggregation Consortium)ENSG00000187051
GNOMAD BrowserENSG00000187051
Genetic variants : HAPMAP91582
Genomic Variants (DGV)RPS19BP1 [DGVbeta]
DECIPHERRPS19BP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS19BP1 
Mutations
ICGC Data PortalRPS19BP1 
TCGA Data PortalRPS19BP1 
Broad Tumor PortalRPS19BP1
OASIS PortalRPS19BP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS19BP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS19BP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS19BP1
DgiDB (Drug Gene Interaction Database)RPS19BP1
DoCM (Curated mutations)RPS19BP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS19BP1 (select a term)
intoGenRPS19BP1
Cancer3DRPS19BP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610225   
Orphanet
MedgenRPS19BP1
Genetic Testing Registry RPS19BP1
NextProtQ86WX3 [Medical]
TSGene91582
GENETestsRPS19BP1
Target ValidationRPS19BP1
Huge Navigator RPS19BP1 [HugePedia]
snp3D : Map Gene to Disease91582
BioCentury BCIQRPS19BP1
ClinGenRPS19BP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91582
Chemical/Pharm GKB GenePA143485599
Clinical trialRPS19BP1
Miscellaneous
canSAR (ICR)RPS19BP1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS19BP1
EVEXRPS19BP1
GoPubMedRPS19BP1
iHOPRPS19BP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:09:19 CET 2017

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