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RPS2 (ribosomal protein S2)

Identity

Alias_symbol (synonym)LLREP3
S2
Other alias
HGNC (Hugo) RPS2
LocusID (NCBI) 6187
Atlas_Id 46336
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1962061 and ends at 1964826 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SUMF2 (7p11.2) / RPS2 (16p13.3)TSC2 (16p13.3) / RPS2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS2   10404
Cards
Entrez_Gene (NCBI)RPS2  6187  ribosomal protein S2
AliasesLLREP3; S2
GeneCards (Weizmann)RPS2
Ensembl hg19 (Hinxton)ENSG00000140988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140988 [Gene_View]  chr16:1962061-1964826 [Contig_View]  RPS2 [Vega]
ICGC DataPortalENSG00000140988
TCGA cBioPortalRPS2
AceView (NCBI)RPS2
Genatlas (Paris)RPS2
WikiGenes6187
SOURCE (Princeton)RPS2
Genetics Home Reference (NIH)RPS2
Genomic and cartography
GoldenPath hg38 (UCSC)RPS2  -     chr16:1962061-1964826 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblRPS2 - 16p13.3 [CytoView hg19]  RPS2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRPS2 [Mapview hg19]  RPS2 [Mapview hg38]
OMIM603624   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_002952
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS2
Cluster EST : UnigeneHs.506997 [ NCBI ]
CGAP (NCI)Hs.506997
Alternative Splicing GalleryENSG00000140988
Gene ExpressionRPS2 [ NCBI-GEO ]   RPS2 [ EBI - ARRAY_EXPRESS ]   RPS2 [ SEEK ]   RPS2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6187
GTEX Portal (Tissue expression)RPS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15880
Splice isoforms : SwissVarP15880
PhosPhoSitePlusP15880
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S5 (PS00585)    S5_DSRBD (PS50881)   
Domains : Interpro (EBI)dsRBD_dom    Ribosomal_S5    Ribosomal_S5_C    Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr    Ribosomal_S5_euk/arc    Ribosomal_S5_N    Ribosomal_S5_N_CS   
Domain families : Pfam (Sanger)Ribosomal_S5 (PF00333)    Ribosomal_S5_C (PF03719)   
Domain families : Pfam (NCBI)pfam00333    pfam03719   
Conserved Domain (NCBI)RPS2
DMDM Disease mutations6187
Blocks (Seattle)RPS2
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP15880
Human Protein AtlasENSG00000140988
Peptide AtlasP15880
HPRD04690
IPIIPI00013485   IPI00981233   IPI00386445   IPI00979595   IPI00976489   IPI00955904   IPI00977651   IPI00977151   IPI00985370   
Protein Interaction databases
DIP (DOE-UCLA)P15880
IntAct (EBI)P15880
FunCoupENSG00000140988
BioGRIDRPS2
STRING (EMBL)RPS2
ZODIACRPS2
Ontologies - Pathways
QuickGOP15880
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  protein methylation  SRP-dependent cotranslational protein targeting to membrane  membrane  fibroblast growth factor binding  viral transcription  enzyme binding  cytosolic small ribosomal subunit  cadherin binding  positive regulation of transferase activity  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleolus  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  protein methylation  SRP-dependent cotranslational protein targeting to membrane  membrane  fibroblast growth factor binding  viral transcription  enzyme binding  cytosolic small ribosomal subunit  cadherin binding  positive regulation of transferase activity  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS2
Atlas of Cancer Signalling NetworkRPS2
Wikipedia pathwaysRPS2
Orthology - Evolution
OrthoDB6187
GeneTree (enSembl)ENSG00000140988
Phylogenetic Trees/Animal Genes : TreeFamRPS2
HOVERGENP15880
HOGENOMP15880
Homologs : HomoloGeneRPS2
Homology/Alignments : Family Browser (UCSC)RPS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS2
dbVarRPS2
ClinVarRPS2
1000_GenomesRPS2 
Exome Variant ServerRPS2
ExAC (Exome Aggregation Consortium)RPS2 (select the gene name)
Genetic variants : HAPMAP6187
Genomic Variants (DGV)RPS2 [DGVbeta]
DECIPHERRPS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS2 
Mutations
ICGC Data PortalRPS2 
TCGA Data PortalRPS2 
Broad Tumor PortalRPS2
OASIS PortalRPS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS2
DgiDB (Drug Gene Interaction Database)RPS2
DoCM (Curated mutations)RPS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS2 (select a term)
intoGenRPS2
Cancer3DRPS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603624   
Orphanet
MedgenRPS2
Genetic Testing Registry RPS2
NextProtP15880 [Medical]
TSGene6187
GENETestsRPS2
Target ValidationRPS2
Huge Navigator RPS2 [HugePedia]
snp3D : Map Gene to Disease6187
BioCentury BCIQRPS2
ClinGenRPS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6187
Chemical/Pharm GKB GenePA34806
Clinical trialRPS2
Miscellaneous
canSAR (ICR)RPS2 (select the gene name)
Probes
Litterature
PubMed88 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS2
EVEXRPS2
GoPubMedRPS2
iHOPRPS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:55 CEST 2017

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