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RPS20 (ribosomal protein S20)

Identity

Alias_symbol (synonym)S20
Other alias
HGNC (Hugo) RPS20
LocusID (NCBI) 6224
Atlas_Id 54955
Location 8q12.1  [Link to chromosome band 8q12]
Location_base_pair Starts at 56985368 and ends at 56987140 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HSPA9 (5q31.2) / RPS20 (8q12.1)PSME2 (14q12) / RPS20 (8q12.1)RPS20 (8q12.1) / CFD (19p13.3)
RPS20 (8q12.1) / CLEC18A (16q22.1)RPS20 (8q12.1) / IARS (9q22.31)RPS20 (8q12.1) / IMPAD1 (8q12.1)
RPS20 (8q12.1) / JOSD2 (19q13.33)RPS20 (8q12.1) / MYH9 (22q12.3)RPS20 (8q12.1) / TLR9 (3p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS20   10405
Cards
Entrez_Gene (NCBI)RPS20  6224  ribosomal protein S20
AliasesS20
GeneCards (Weizmann)RPS20
Ensembl hg19 (Hinxton)ENSG00000008988 [Gene_View]  chr8:56985368-56987140 [Contig_View]  RPS20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000008988 [Gene_View]  chr8:56985368-56987140 [Contig_View]  RPS20 [Vega]
ICGC DataPortalENSG00000008988
TCGA cBioPortalRPS20
AceView (NCBI)RPS20
Genatlas (Paris)RPS20
WikiGenes6224
SOURCE (Princeton)RPS20
Genetics Home Reference (NIH)RPS20
Genomic and cartography
GoldenPath hg19 (UCSC)RPS20  -     chr8:56985368-56987140 -  8q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS20  -     8q12.1   [Description]    (hg38-Dec_2013)
EnsemblRPS20 - 8q12.1 [CytoView hg19]  RPS20 - 8q12.1 [CytoView hg38]
Mapping of homologs : NCBIRPS20 [Mapview hg19]  RPS20 [Mapview hg38]
OMIM603682   
Gene and transcription
Genbank (Entrez)AK130961 AK301342 AK311808 AV716603 BC007507
RefSeq transcript (Entrez)NM_001023 NM_001146227
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_042872 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)RPS20
Cluster EST : UnigeneHs.8102 [ NCBI ]
CGAP (NCI)Hs.8102
Alternative Splicing GalleryENSG00000008988
Gene ExpressionRPS20 [ NCBI-GEO ]   RPS20 [ EBI - ARRAY_EXPRESS ]   RPS20 [ SEEK ]   RPS20 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6224
GTEX Portal (Tissue expression)RPS20
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60866   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60866  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60866
Splice isoforms : SwissVarP60866
PhosPhoSitePlusP60866
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S10 (PS00361)   
Domains : Interpro (EBI)Ribosomal_S10    Ribosomal_S10_CS    Ribosomal_S10_dom    Ribosomal_S10_euk/arc   
Domain families : Pfam (Sanger)Ribosomal_S10 (PF00338)   
Domain families : Pfam (NCBI)pfam00338   
Conserved Domain (NCBI)RPS20
DMDM Disease mutations6224
Blocks (Seattle)RPS20
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX   
SuperfamilyP60866
Human Protein AtlasENSG00000008988
Peptide AtlasP60866
HPRD04728
IPIIPI00012493   IPI00794659   IPI00794061   IPI00791265   IPI00796373   
Protein Interaction databases
DIP (DOE-UCLA)P60866
IntAct (EBI)P60866
FunCoupENSG00000008988
BioGRIDRPS20
STRING (EMBL)RPS20
ZODIACRPS20
Ontologies - Pathways
QuickGOP60866
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  poly(A) RNA binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  poly(A) RNA binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS20
Atlas of Cancer Signalling NetworkRPS20
Wikipedia pathwaysRPS20
Orthology - Evolution
OrthoDB6224
GeneTree (enSembl)ENSG00000008988
Phylogenetic Trees/Animal Genes : TreeFamRPS20
HOVERGENP60866
HOGENOMP60866
Homologs : HomoloGeneRPS20
Homology/Alignments : Family Browser (UCSC)RPS20
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPS20 [8q12.1]  -  IMPAD1 [8q12.1]  [FUSC002359]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS20
dbVarRPS20
ClinVarRPS20
1000_GenomesRPS20 
Exome Variant ServerRPS20
ExAC (Exome Aggregation Consortium)RPS20 (select the gene name)
Genetic variants : HAPMAP6224
Genomic Variants (DGV)RPS20 [DGVbeta]
DECIPHER (Syndromes)8:56985368-56987140  ENSG00000008988
CONAN: Copy Number AnalysisRPS20 
Mutations
ICGC Data PortalRPS20 
TCGA Data PortalRPS20 
Broad Tumor PortalRPS20
OASIS PortalRPS20 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPS20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS20
DgiDB (Drug Gene Interaction Database)RPS20
DoCM (Curated mutations)RPS20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS20 (select a term)
intoGenRPS20
Cancer3DRPS20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603682   
Orphanet23409   
MedgenRPS20
Genetic Testing Registry RPS20
NextProtP60866 [Medical]
TSGene6224
GENETestsRPS20
Huge Navigator RPS20 [HugePedia]
snp3D : Map Gene to Disease6224
BioCentury BCIQRPS20
ClinGenRPS20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6224
Chemical/Pharm GKB GenePA34807
Clinical trialRPS20
Miscellaneous
canSAR (ICR)RPS20 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS20
EVEXRPS20
GoPubMedRPS20
iHOPRPS20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:43 CET 2017

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