Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS23 (ribosomal protein S23)

Identity

Alias_symbol (synonym)S23
Other aliasMABAS
PAMAS
HGNC (Hugo) RPS23
LocusID (NCBI) 6228
Atlas_Id 72863
Location 5q14.2  [Link to chromosome band 5q14]
Location_base_pair Starts at 82273320 and ends at 82278416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CUTA (6p21.32) / RPS23 (5q14.2)EFNA5 (5q21.3) / RPS23 (5q14.2)MRPL30 (2q11.2) / RPS23 (5q14.2)
NLGN4X (Xp22.32) / RPS23 (5q14.2)RPS23 (5q14.2) / CCDC80 (3q13.2)RPS23 (5q14.2) / MRPL30 (2q11.2)
RPS23 (5q14.2) / RPS24 (10q22.3)SNX19 (11q24.3) / RPS23 (5q14.2)TUBA1C (12q13.12) / RPS23 (5q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS23   10410
Cards
Entrez_Gene (NCBI)RPS23  6228  ribosomal protein S23
AliasesMABAS; PAMAS; S23
GeneCards (Weizmann)RPS23
Ensembl hg19 (Hinxton)ENSG00000186468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186468 [Gene_View]  chr5:82273320-82278416 [Contig_View]  RPS23 [Vega]
ICGC DataPortalENSG00000186468
TCGA cBioPortalRPS23
AceView (NCBI)RPS23
Genatlas (Paris)RPS23
WikiGenes6228
SOURCE (Princeton)RPS23
Genetics Home Reference (NIH)RPS23
Genomic and cartography
GoldenPath hg38 (UCSC)RPS23  -     chr5:82273320-82278416 -  5q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS23  -     5q14.2   [Description]    (hg19-Feb_2009)
EnsemblRPS23 - 5q14.2 [CytoView hg19]  RPS23 - 5q14.2 [CytoView hg38]
Mapping of homologs : NCBIRPS23 [Mapview hg19]  RPS23 [Mapview hg38]
OMIM603683   617412   
Gene and transcription
Genbank (Entrez)AI955885 AK092335 AK291132 AK311772 BC046998
RefSeq transcript (Entrez)NM_001025
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS23
Cluster EST : UnigeneHs.527193 [ NCBI ]
CGAP (NCI)Hs.527193
Alternative Splicing GalleryENSG00000186468
Gene ExpressionRPS23 [ NCBI-GEO ]   RPS23 [ EBI - ARRAY_EXPRESS ]   RPS23 [ SEEK ]   RPS23 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6228
GTEX Portal (Tissue expression)RPS23
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62266   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62266  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62266
Splice isoforms : SwissVarP62266
PhosPhoSitePlusP62266
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S12 (PS00055)   
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S12/S23    Ribosomal_S23_euk/arc   
Domain families : Pfam (Sanger)Ribosom_S12_S23 (PF00164)   
Domain families : Pfam (NCBI)pfam00164   
Conserved Domain (NCBI)RPS23
DMDM Disease mutations6228
Blocks (Seattle)RPS23
PDB (SRS)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4CXG    4CXH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62266
Human Protein AtlasENSG00000186468
Peptide AtlasP62266
HPRD04729
IPIIPI00218606   IPI00965062   IPI00966370   IPI00968307   IPI00966986   
Protein Interaction databases
DIP (DOE-UCLA)P62266
IntAct (EBI)P62266
FunCoupENSG00000186468
BioGRIDRPS23
STRING (EMBL)RPS23
ZODIACRPS23
Ontologies - Pathways
QuickGOP62266
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  ribosome  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  ribosome  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  
Pathways : KEGGRibosome   
NDEx NetworkRPS23
Atlas of Cancer Signalling NetworkRPS23
Wikipedia pathwaysRPS23
Orthology - Evolution
OrthoDB6228
GeneTree (enSembl)ENSG00000186468
Phylogenetic Trees/Animal Genes : TreeFamRPS23
HOVERGENP62266
HOGENOMP62266
Homologs : HomoloGeneRPS23
Homology/Alignments : Family Browser (UCSC)RPS23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS23
dbVarRPS23
ClinVarRPS23
1000_GenomesRPS23 
Exome Variant ServerRPS23
ExAC (Exome Aggregation Consortium)RPS23 (select the gene name)
Genetic variants : HAPMAP6228
Genomic Variants (DGV)RPS23 [DGVbeta]
DECIPHERRPS23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS23 
Mutations
ICGC Data PortalRPS23 
TCGA Data PortalRPS23 
Broad Tumor PortalRPS23
OASIS PortalRPS23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS23
DgiDB (Drug Gene Interaction Database)RPS23
DoCM (Curated mutations)RPS23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS23 (select a term)
intoGenRPS23
Cancer3DRPS23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603683    617412   
Orphanet
MedgenRPS23
Genetic Testing Registry RPS23
NextProtP62266 [Medical]
TSGene6228
GENETestsRPS23
Target ValidationRPS23
Huge Navigator RPS23 [HugePedia]
snp3D : Map Gene to Disease6228
BioCentury BCIQRPS23
ClinGenRPS23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6228
Chemical/Pharm GKB GenePA34813
Clinical trialRPS23
Miscellaneous
canSAR (ICR)RPS23 (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS23
EVEXRPS23
GoPubMedRPS23
iHOPRPS23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:28 CEST 2017

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