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RPS24 (ribosomal protein S24)

Identity

Alias (NCBI)DBA3
S24
eS24
HGNC (Hugo) RPS24
HGNC Alias symbS24
eS24
LocusID (NCBI) 6229
Atlas_Id 44020
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 78033863 and ends at 78040697 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IDH1 (2q34) / RPS24 (10q22.3)PAPPA (9q33.1) / RPS24 (10q22.3)PLA2G2A (1p36.13) / RPS24 (10q22.3)
RPS23 (5q14.2) / RPS24 (10q22.3)RPS24 (10q22.3) / CAMK2G (10q22.2)RPS24 (10q22.3) / CLASP1 (2q14.2)
RPS24 (10q22.3) / CLSTN2 (3q23)RPS24 (10q22.3) / CPEB2 (4p15.33)RPS24 (10q22.3) / CTNND1 (11q12.1)
RPS24 (10q22.3) / LOC100134368 (16p13.3)RPS24 (10q22.3) / LUZP1 (1p36.12)RPS24 (10q22.3) / PABPC1 (8q22.3)
RPS24 (10q22.3) / PITPNA (17p13.3)RPS24 (10q22.3) / PMPCB (7q22.1)RPS24 (10q22.3) / RPS24 (10q22.3)
RPS27 (1q21.3) / RPS24 (10q22.3)SMAP2 (1p34.2) / RPS24 (10q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  del(5q) in myeloid neoplasms


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Diamond-Blackfan anemia (DBA)


External links

 

Nomenclature
HGNC (Hugo)RPS24   10411
LRG (Locus Reference Genomic)LRG_1145
Cards
Entrez_Gene (NCBI)RPS24    ribosomal protein S24
AliasesDBA3; S24; eS24
GeneCards (Weizmann)RPS24
Ensembl hg19 (Hinxton)ENSG00000138326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138326 [Gene_View]  ENSG00000138326 [Sequence]  chr10:78033863-78040697 [Contig_View]  RPS24 [Vega]
ICGC DataPortalENSG00000138326
TCGA cBioPortalRPS24
AceView (NCBI)RPS24
Genatlas (Paris)RPS24
SOURCE (Princeton)RPS24
Genetics Home Reference (NIH)RPS24
Genomic and cartography
GoldenPath hg38 (UCSC)RPS24  -     chr10:78033863-78040697 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS24  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathRPS24 - 10q22.3 [CytoView hg19]  RPS24 - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000138326
Genome Data Viewer NCBIRPS24 [Mapview hg19]  
OMIM602412   610629   
Gene and transcription
Genbank (Entrez)AF147330 AK311776 AK311910 BC000523 BC003149
RefSeq transcript (Entrez)NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022
Consensus coding sequences : CCDS (NCBI)RPS24
Gene ExpressionRPS24 [ NCBI-GEO ]   RPS24 [ EBI - ARRAY_EXPRESS ]   RPS24 [ SEEK ]   RPS24 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS24 [ Firebrowse - Broad ]
GenevisibleExpression of RPS24 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6229
GTEX Portal (Tissue expression)RPS24
Human Protein AtlasENSG00000138326-RPS24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62847   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62847  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62847
PhosPhoSitePlusP62847
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S24E (PS00529)   
Domains : Interpro (EBI)Ribosomal_L23/L15e_core_dom_sf    Ribosomal_S24e    Ribosomal_S24e_CS   
Domain families : Pfam (Sanger)Ribosomal_S24e (PF01282)   
Domain families : Pfam (NCBI)pfam01282   
Conserved Domain (NCBI)RPS24
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
PDB Europe4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G4W    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    7K5I   
SuperfamilyP62847
AlphaFold pdb e-kbP62847   
Human Protein Atlas [tissue]ENSG00000138326-RPS24 [tissue]
HPRD03877
Protein Interaction databases
DIP (DOE-UCLA)P62847
IntAct (EBI)P62847
BioGRIDRPS24
STRING (EMBL)RPS24
ZODIACRPS24
Ontologies - Pathways
QuickGOP62847
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleoplasm  endoplasmic reticulum  cytosol  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  membrane  viral transcription  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleoplasm  endoplasmic reticulum  cytosol  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  membrane  viral transcription  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  
Pathways : KEGGRibosome   
NDEx NetworkRPS24
Atlas of Cancer Signalling NetworkRPS24
Wikipedia pathwaysRPS24
Orthology - Evolution
OrthoDB6229
GeneTree (enSembl)ENSG00000138326
Phylogenetic Trees/Animal Genes : TreeFamRPS24
Homologs : HomoloGeneRPS24
Homology/Alignments : Family Browser (UCSC)RPS24
Gene fusions - Rearrangements
Fusion Cancer (Beijing)PLA2G2A [1p36.13]  -  RPS24 [10q22.3]  [FUSC004537]
Fusion Cancer (Beijing)RPS24 [10q22.3]  -  PABPC1 [8q22.3]  [FUSC000713]
Fusion Cancer (Beijing)RPS24 [10q22.3]  -  PITPNA [17p13.3]  [FUSC000763]
Fusion : QuiverRPS24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS24
dbVarRPS24
ClinVarRPS24
MonarchRPS24
1000_GenomesRPS24 
Exome Variant ServerRPS24
GNOMAD BrowserENSG00000138326
Varsome BrowserRPS24
ACMGRPS24 variants
VarityP62847
Genomic Variants (DGV)RPS24 [DGVbeta]
DECIPHERRPS24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS24 
Mutations
ICGC Data PortalRPS24 
TCGA Data PortalRPS24 
Broad Tumor PortalRPS24
OASIS PortalRPS24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPS24
Mutations and Diseases : HGMDRPS24
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPS24
DgiDB (Drug Gene Interaction Database)RPS24
DoCM (Curated mutations)RPS24
CIViC (Clinical Interpretations of Variants in Cancer)RPS24
Cancer3DRPS24
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602412    610629   
Orphanet429   
DisGeNETRPS24
MedgenRPS24
Genetic Testing Registry RPS24
NextProtP62847 [Medical]
GENETestsRPS24
Target ValidationRPS24
Huge Navigator RPS24 [HugePedia]
ClinGenRPS24 (curated)
Clinical trials, drugs, therapy
MyCancerGenomeRPS24
Protein Interactions : CTDRPS24
Pharm GKB GenePA34815
PharosP62847
Clinical trialRPS24
Miscellaneous
canSAR (ICR)RPS24
HarmonizomeRPS24
DataMed IndexRPS24
Probes
Litterature
PubMed130 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPS24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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