Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPS24 (ribosomal protein S24)

Identity

Other namesDBA3
S24
HGNC (Hugo) RPS24
LocusID (NCBI) 6229
Atlas_Id 44020
Location 10q22.3
Location_base_pair Starts at 79793518 and ends at 79800473 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPS24   10411
Cards
Entrez_Gene (NCBI)RPS24  6229  ribosomal protein S24
GeneCards (Weizmann)RPS24
Ensembl hg19 (Hinxton)ENSG00000138326 [Gene_View]  chr10:79793518-79800473 [Contig_View]  RPS24 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138326 [Gene_View]  chr10:79793518-79800473 [Contig_View]  RPS24 [Vega]
ICGC DataPortalENSG00000138326
TCGA cBioPortalRPS24
AceView (NCBI)RPS24
Genatlas (Paris)RPS24
WikiGenes6229
SOURCE (Princeton)RPS24
Genomic and cartography
GoldenPath hg19 (UCSC)RPS24  -     chr10:79793518-79800473 +  10q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS24  -     10q22.3   [Description]    (hg38-Dec_2013)
EnsemblRPS24 - 10q22.3 [CytoView hg19]  RPS24 - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBIRPS24 [Mapview hg19]  RPS24 [Mapview hg38]
OMIM602412   610629   
Gene and transcription
Genbank (Entrez)AF147330 AK311776 AK311910 AM393376 AM393791
RefSeq transcript (Entrez)NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_012633 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)RPS24
Cluster EST : UnigeneHs.280130 [ NCBI ]
CGAP (NCI)Hs.280130
Alternative Splicing : Fast-db (Paris)GSHG0003487
Alternative Splicing GalleryENSG00000138326
Gene ExpressionRPS24 [ NCBI-GEO ]     RPS24 [ SEEK ]   RPS24 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62847 (Uniprot)
NextProtP62847  [Medical]  [Publications]
With graphics : InterProP62847
Splice isoforms : SwissVarP62847 (Swissvar)
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S24E (PS00529)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    Ribosomal_L23/L15e_core_dom    Ribosomal_S24e    Ribosomal_S24e_CS   
Related proteins : CluSTrP62847
Domain families : Pfam (Sanger)Ribosomal_S24e (PF01282)   
Domain families : Pfam (NCBI)pfam01282   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S24e (PD006052)   
DMDM Disease mutations6229
Blocks (Seattle)P62847
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Human Protein AtlasENSG00000138326
Peptide AtlasP62847
HPRD03877
IPIIPI00029750   IPI00847986   IPI00915463   IPI00903204   IPI00915363   
Protein Interaction databases
DIP (DOE-UCLA)P62847
IntAct (EBI)P62847
FunCoupENSG00000138326
BioGRIDRPS24
IntegromeDBRPS24
STRING (EMBL)RPS24
Ontologies - Pathways
QuickGOP62847
Ontology : AmiGOnucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  small ribosomal subunit  small ribosomal subunit  membrane  viral process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  small ribosomal subunit  small ribosomal subunit  membrane  viral process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPS24
DoCM (Curated mutations)RPS24
Wikipedia pathwaysRPS24
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerRPS24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS24
dbVarRPS24
ClinVarRPS24
1000_GenomesRPS24 
Exome Variant ServerRPS24
SNP (GeneSNP Utah)RPS24
SNP : HGBaseRPS24
Genetic variants : HAPMAPRPS24
Genomic Variants (DGV)RPS24 [DGVbeta]
Mutations
ICGC Data PortalRPS24 
TCGA Data PortalRPS24 
Tumor PortalRPS24
Somatic Mutations in Cancer : COSMICRPS24 
LOVD (Leiden Open Variation Database)genes/RPS24
LOVD (Leiden Open Variation Database)genes/RPS24
LOVD (Leiden Open Variation Database)genes/RPS24
LOVD (Leiden Open Variation Database)genes/RPS24
LOVD (Leiden Open Variation Database)genes/RPS24
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:79793518-79800473
CONAN: Copy Number AnalysisRPS24 
Mutations and Diseases : HGMDRPS24
OMIM602412    610629   
MedgenRPS24
NextProtP62847 [Medical]
GENETestsRPS24
Disease Genetic AssociationRPS24
Huge Navigator RPS24 [HugePedia]  RPS24 [HugeCancerGEM]
snp3D : Map Gene to Disease6229
DGIdb (Drug Gene Interaction db)RPS24
BioCentury BCIQRPS24
General knowledge
Homologs : HomoloGeneRPS24
Homology/Alignments : Family Browser (UCSC)RPS24
Phylogenetic Trees/Animal Genes : TreeFamRPS24
Chemical/Protein Interactions : CTD6229
Chemical/Pharm GKB GenePA34815
Clinical trialRPS24
Cancer Resource (Charite)ENSG00000138326
Other databases
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
CoreMineRPS24
GoPubMedRPS24
iHOPRPS24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 19:16:19 CEST 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.