Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS24 (ribosomal protein S24)

Identity

Other namesDBA3
S24
HGNC (Hugo) RPS24
LocusID (NCBI) 6229
Location 10q22.3
Location_base_pair Starts at 79793518 and ends at 79800473 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPS24   10411
Cards
Entrez_Gene (NCBI)RPS24  6229  ribosomal protein S24
GeneCards (Weizmann)RPS24
Ensembl (Hinxton)ENSG00000138326 [Gene_View]  chr10:79793518-79800473 [Contig_View]  RPS24 [Vega]
ICGC DataPortalENSG00000138326
AceView (NCBI)RPS24
Genatlas (Paris)RPS24
WikiGenes6229
SOURCE (Princeton)NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022
Genomic and cartography
GoldenPath (UCSC)RPS24  -  10q22.3   chr10:79793518-79800473 +  10q22.3   [Description]    (hg19-Feb_2009)
EnsemblRPS24 - 10q22.3 [CytoView]
Mapping of homologs : NCBIRPS24 [Mapview]
OMIM602412   610629   
Gene and transcription
Genbank (Entrez)AF147330 AK311776 AK311910 AM393376 AM393791
RefSeq transcript (Entrez)NM_001026 NM_001142282 NM_001142283 NM_001142284 NM_001142285 NM_033022
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NG_012633 NT_030059 NW_001837987 NW_004929376
Consensus coding sequences : CCDS (NCBI)RPS24
Cluster EST : UnigeneHs.280130 [ NCBI ]
CGAP (NCI)Hs.280130
Alternative Splicing : Fast-db (Paris)GSHG0003487
Alternative Splicing GalleryENSG00000138326
Gene ExpressionRPS24 [ NCBI-GEO ]     RPS24 [ SEEK ]   RPS24 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62847 (Uniprot)
NextProtP62847  [Medical]
With graphics : InterProP62847
Splice isoforms : SwissVarP62847 (Swissvar)
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S24E (PS00529)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    Ribosomal_L23/L15e_core_dom    Ribosomal_S24e    Ribosomal_S24e_CS   
Related proteins : CluSTrP62847
Domain families : Pfam (Sanger)Ribosomal_S24e (PF01282)   
Domain families : Pfam (NCBI)pfam01282   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S24e (PD006052)   
DMDM Disease mutations6229
Blocks (Seattle)P62847
PDB (SRS)3J3A   
PDB (PDBSum)3J3A   
PDB (IMB)3J3A   
PDB (RSDB)3J3A   
Human Protein AtlasENSG00000138326
Peptide AtlasP62847
HPRD03877
IPIIPI00029750   IPI00847986   IPI00915463   IPI00903204   IPI00915363   
Protein Interaction databases
DIP (DOE-UCLA)P62847
IntAct (EBI)P62847
FunCoupENSG00000138326
BioGRIDRPS24
InParanoidP62847
Interologous Interaction database P62847
IntegromeDBRPS24
STRING (EMBL)RPS24
Ontologies - Pathways
Ontology : AmiGOnucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  small ribosomal subunit  small ribosomal subunit  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  small ribosomal subunit  small ribosomal subunit  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic small ribosomal subunit  translation initiation factor binding  erythrocyte homeostasis  ribosomal small subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPS24
Wikipedia pathwaysRPS24
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPS24
SNP (GeneSNP Utah)RPS24
SNP : HGBaseRPS24
Genetic variants : HAPMAPRPS24
1000_GenomesRPS24 
ICGC programENSG00000138326 
CONAN: Copy Number AnalysisRPS24 
Somatic Mutations in Cancer : COSMICRPS24 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
Mutations and Diseases : HGMDRPS24
OMIM602412    610629   
MedgenRPS24
GENETestsRPS24
Disease Genetic AssociationRPS24
Huge Navigator RPS24 [HugePedia]  RPS24 [HugeCancerGEM]
Genomic VariantsRPS24  RPS24 [DGVbeta]
Exome VariantRPS24
dbVarRPS24
ClinVarRPS24
snp3D : Map Gene to Disease6229
General knowledge
Homologs : HomoloGeneRPS24
Homology/Alignments : Family Browser (UCSC)RPS24
Phylogenetic Trees/Animal Genes : TreeFamRPS24
Chemical/Protein Interactions : CTD6229
Chemical/Pharm GKB GenePA34815
Clinical trialRPS24
Cancer Resource (Charite)ENSG00000138326
Other databases
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
CoreMineRPS24
iHOPRPS24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:14:15 CEST 2014

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