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RPS25 (ribosomal protein S25)

Identity

Alias_symbol (synonym)S25
Other alias
HGNC (Hugo) RPS25
LocusID (NCBI) 6230
Atlas_Id 72864
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119015713 and ends at 119018347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLIC4 (1p36.11) / RPS25 (11q23.3)RPS25 (11q23.3) / STK4 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS25   10413
Cards
Entrez_Gene (NCBI)RPS25  6230  ribosomal protein S25
AliasesS25
GeneCards (Weizmann)RPS25
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:119015713-119018347 [Contig_View]  RPS25 [Vega]
TCGA cBioPortalRPS25
AceView (NCBI)RPS25
Genatlas (Paris)RPS25
WikiGenes6230
SOURCE (Princeton)RPS25
Genetics Home Reference (NIH)RPS25
Genomic and cartography
GoldenPath hg38 (UCSC)RPS25  -     chr11:119015713-119018347 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS25  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblRPS25 - 11q23.3 [CytoView hg19]  RPS25 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIRPS25 [Mapview hg19]  RPS25 [Mapview hg38]
OMIM180465   
Gene and transcription
Genbank (Entrez)AK311883 BC004294 BC004986 D28369 DQ893042
RefSeq transcript (Entrez)NM_001028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS25
Cluster EST : UnigeneHs.512676 [ NCBI ]
CGAP (NCI)Hs.512676
Gene ExpressionRPS25 [ NCBI-GEO ]   RPS25 [ EBI - ARRAY_EXPRESS ]   RPS25 [ SEEK ]   RPS25 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6230
GTEX Portal (Tissue expression)RPS25
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62851   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62851  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62851
Splice isoforms : SwissVarP62851
PhosPhoSitePlusP62851
Domains : Interpro (EBI)Ribosomal_S25   
Domain families : Pfam (Sanger)Ribosomal_S25 (PF03297)   
Domain families : Pfam (NCBI)pfam03297   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S25 (PD012268)   
Conserved Domain (NCBI)RPS25
DMDM Disease mutations6230
Blocks (Seattle)RPS25
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62851
Peptide AtlasP62851
HPRD01593
IPIIPI00012750   IPI00983994   IPI00985422   IPI00981398   
Protein Interaction databases
DIP (DOE-UCLA)P62851
IntAct (EBI)P62851
BioGRIDRPS25
STRING (EMBL)RPS25
ZODIACRPS25
Ontologies - Pathways
QuickGOP62851
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  ribosome  ribosome  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  extracellular matrix  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  ribosome  ribosome  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  extracellular matrix  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS25
Atlas of Cancer Signalling NetworkRPS25
Wikipedia pathwaysRPS25
Orthology - Evolution
OrthoDB6230
Phylogenetic Trees/Animal Genes : TreeFamRPS25
HOVERGENP62851
HOGENOMP62851
Homologs : HomoloGeneRPS25
Homology/Alignments : Family Browser (UCSC)RPS25
Gene fusions - Rearrangements
Fusion: Tumor Portal RPS25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS25
dbVarRPS25
ClinVarRPS25
1000_GenomesRPS25 
Exome Variant ServerRPS25
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP6230
Genomic Variants (DGV)RPS25 [DGVbeta]
DECIPHERRPS25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS25 
Mutations
ICGC Data PortalRPS25 
TCGA Data PortalRPS25 
Broad Tumor PortalRPS25
OASIS PortalRPS25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS25
DgiDB (Drug Gene Interaction Database)RPS25
DoCM (Curated mutations)RPS25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS25 (select a term)
intoGenRPS25
Cancer3DRPS25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180465   
Orphanet
MedgenRPS25
Genetic Testing Registry RPS25
NextProtP62851 [Medical]
TSGene6230
GENETestsRPS25
Target ValidationRPS25
Huge Navigator RPS25 [HugePedia]
snp3D : Map Gene to Disease6230
BioCentury BCIQRPS25
ClinGenRPS25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6230
Chemical/Pharm GKB GenePA34817
Clinical trialRPS25
Miscellaneous
canSAR (ICR)RPS25 (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS25
EVEXRPS25
GoPubMedRPS25
iHOPRPS25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:25:53 CET 2017

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