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RPS26 (ribosomal protein S26)

Identity

Alias_symbol (synonym)S26
Other aliasDBA10
HGNC (Hugo) RPS26
LocusID (NCBI) 6231
Atlas_Id 72865
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 56041902 and ends at 56044223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS26   10414
Cards
Entrez_Gene (NCBI)RPS26  6231  ribosomal protein S26
AliasesDBA10; S26
GeneCards (Weizmann)RPS26
Ensembl hg19 (Hinxton)ENSG00000197728 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197728 [Gene_View]  chr12:56041902-56044223 [Contig_View]  RPS26 [Vega]
ICGC DataPortalENSG00000197728
TCGA cBioPortalRPS26
AceView (NCBI)RPS26
Genatlas (Paris)RPS26
WikiGenes6231
SOURCE (Princeton)RPS26
Genetics Home Reference (NIH)RPS26
Genomic and cartography
GoldenPath hg38 (UCSC)RPS26  -     chr12:56041902-56044223 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS26  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblRPS26 - 12q13.2 [CytoView hg19]  RPS26 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIRPS26 [Mapview hg19]  RPS26 [Mapview hg38]
OMIM603701   613309   
Gene and transcription
Genbank (Entrez)AV681946 BC002604 BC013215 BC015832 BC070220
RefSeq transcript (Entrez)NM_001029
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS26
Cluster EST : UnigeneHs.711461 [ NCBI ]
CGAP (NCI)Hs.711461
Alternative Splicing GalleryENSG00000197728
Gene ExpressionRPS26 [ NCBI-GEO ]   RPS26 [ EBI - ARRAY_EXPRESS ]   RPS26 [ SEEK ]   RPS26 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6231
GTEX Portal (Tissue expression)RPS26
Human Protein AtlasENSG00000197728-RPS26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62854   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62854  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62854
Splice isoforms : SwissVarP62854
PhosPhoSitePlusP62854
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S26E (PS00733)   
Domains : Interpro (EBI)Ribosomal_S26e   
Domain families : Pfam (Sanger)Ribosomal_S26e (PF01283)   
Domain families : Pfam (NCBI)pfam01283   
Conserved Domain (NCBI)RPS26
DMDM Disease mutations6231
Blocks (Seattle)RPS26
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62854
Human Protein Atlas [tissue]ENSG00000197728-RPS26 [tissue]
Peptide AtlasP62854
HPRD04743
IPIIPI00655650   
Protein Interaction databases
DIP (DOE-UCLA)P62854
IntAct (EBI)P62854
FunCoupENSG00000197728
BioGRIDRPS26
STRING (EMBL)RPS26
ZODIACRPS26
Ontologies - Pathways
QuickGOP62854
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  membrane  viral transcription  cytosolic small ribosomal subunit  negative regulation of RNA splicing  cadherin binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  membrane  viral transcription  cytosolic small ribosomal subunit  negative regulation of RNA splicing  cadherin binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS26
Atlas of Cancer Signalling NetworkRPS26
Wikipedia pathwaysRPS26
Orthology - Evolution
OrthoDB6231
GeneTree (enSembl)ENSG00000197728
Phylogenetic Trees/Animal Genes : TreeFamRPS26
HOVERGENP62854
HOGENOMP62854
Homologs : HomoloGeneRPS26
Homology/Alignments : Family Browser (UCSC)RPS26
Gene fusions - Rearrangements
Fusion: Tumor Portal RPS26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS26
dbVarRPS26
ClinVarRPS26
1000_GenomesRPS26 
Exome Variant ServerRPS26
ExAC (Exome Aggregation Consortium)ENSG00000197728
GNOMAD BrowserENSG00000197728
Genetic variants : HAPMAP6231
Genomic Variants (DGV)RPS26 [DGVbeta]
DECIPHERRPS26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS26 
Mutations
ICGC Data PortalRPS26 
TCGA Data PortalRPS26 
Broad Tumor PortalRPS26
OASIS PortalRPS26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPS26
DgiDB (Drug Gene Interaction Database)RPS26
DoCM (Curated mutations)RPS26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS26 (select a term)
intoGenRPS26
Cancer3DRPS26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603701    613309   
Orphanet429   
MedgenRPS26
Genetic Testing Registry RPS26
NextProtP62854 [Medical]
TSGene6231
GENETestsRPS26
Target ValidationRPS26
Huge Navigator RPS26 [HugePedia]
snp3D : Map Gene to Disease6231
BioCentury BCIQRPS26
ClinGenRPS26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6231
Chemical/Pharm GKB GenePA34818
Clinical trialRPS26
Miscellaneous
canSAR (ICR)RPS26 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS26
EVEXRPS26
GoPubMedRPS26
iHOPRPS26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:25:53 CET 2017

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