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RPS26P11 (ribosomal protein S26 pseudogene 11)

Identity

Alias_namesRPS26L1
ribosomal protein S26-like 1
Alias_symbol (synonym)bA366E13.1
Other aliasRPS26_22_1784
HGNC (Hugo) RPS26P11
LocusID (NCBI) 441502
Atlas_Id 72866
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 72044409 and ends at 72044961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

CoreMine
Nomenclature
HGNC (Hugo)RPS26P11   31817
Cards
Entrez_Gene (NCBI)RPS26P11  441502  ribosomal protein S26 pseudogene 11
AliasesRPS26L1; RPS26_22_1784; bA366E13.1
GeneCards (Weizmann)RPS26P11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:72044409-72044961 [Contig_View]  RPS26P11 [Vega]
TCGA cBioPortalRPS26P11
AceView (NCBI)RPS26P11
Genatlas (Paris)RPS26P11
WikiGenes441502
SOURCE (Princeton)RPS26P11
Genetics Home Reference (NIH)RPS26P11
Genomic and cartography
GoldenPath hg38 (UCSC)RPS26P11  -     chrX:72044409-72044961 +  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS26P11  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblRPS26P11 - Xq13.1 [CytoView hg19]  RPS26P11 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIRPS26P11 [Mapview hg19]  RPS26P11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW972305
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS26P11
Cluster EST : UnigeneHs.449523 [ NCBI ]
CGAP (NCI)Hs.449523
Gene ExpressionRPS26P11 [ NCBI-GEO ]   RPS26P11 [ EBI - ARRAY_EXPRESS ]   RPS26P11 [ SEEK ]   RPS26P11 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS26P11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441502
GTEX Portal (Tissue expression)RPS26P11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JNZ5   [function]  [subcellular_location]  [family_and_domains]  //www.uniprot.org/uniprot/Q5JNZ5#pathology_and_biotech TARGET=UniProt_patho>[pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JNZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JNZ5
Splice isoforms : SwissVarQ5JNZ5
PhosPhoSitePlusQ5JNZ5
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S26E (PS00733)   
Domains : Interpro (EBI)Ribosomal_S26e   
Domain families : Pfam (Sanger)Ribosomal_S26e (PF01283)   
Domain families : Pfam (NCBI)pfam01283   
Conserved Domain (NCBI)RPS26P11
DMDM Disease mutations441502
Blocks (Seattle)RPS26P11
SuperfamilyQ5JNZ5
Peptide AtlasQ5JNZ5
IPIIPI00187140   
Protein Interaction databases
DIP (DOE-UCLA)Q5JNZ5
IntAct (EBI)Q5JNZ5
BioGRIDRPS26P11
STRING (EMBL)RPS26P11
ZODIACRPS26P11
Ontologies - Pathways
QuickGOQ5JNZ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRPS26P11
Atlas of Cancer Signalling NetworkRPS26P11
Wikipedia pathwaysRPS26P11
Orthology - Evolution
OrthoDB441502
Phylogenetic Trees/Animal Genes : TreeFamRPS26P11
HOVERGENQ5JNZ5
HOGENOMQ5JNZ5
Homologs : HomoloGeneRPS26P11
Homology/Alignments : Family Browser (UCSC)RPS26P11
Gene fusions - Rearrangements
Tumor Fusion PortalRPS26P11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS26P11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS26P11
dbVarRPS26P11
ClinVarRPS26P11
1000_GenomesRPS26P11 
Exome Variant ServerRPS26P11
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP441502
Genomic Variants (DGV)RPS26P11 [DGVbeta]
DECIPHERRPS26P11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS26P11 
Mutations
ICGC Data PortalRPS26P11 
TCGA Data PortalRPS26P11 
Broad Tumor PortalRPS26P11
OASIS PortalRPS26P11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS26P11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS26P11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RPS26P11
DgiDB (Drug Gene Interaction Database)RPS26P11
DoCM (Curated mutations)RPS26P11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS26P11 (select a term)
intoGenRPS26P11
Cancer3DRPS26P11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPS26P11
MedgenRPS26P11
Genetic Testing Registry RPS26P11
NextProtQ5JNZ5 [Medical]
TSGene441502
GENETestsRPS26P11
Target ValidationRPS26P11
Huge Navigator RPS26P11 [HugePedia]
snp3D : Map Gene to Disease441502
BioCentury BCIQRPS26P11
ClinGenRPS26P11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441502
Chemical/Pharm GKB GenePA142670971
Clinical trialRPS26P11
Miscellaneous
canSAR (ICR)RPS26P11 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
RPS26P11
EVEXRPS26P11
GoPubMedRPS26P11
iHOPRPS26P11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:30 CET 2017

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