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RPS27L (ribosomal protein S27 like)

Identity

Alias_namesribosomal protein S27-like
Other alias-
HGNC (Hugo) RPS27L
LocusID (NCBI) 51065
Atlas_Id 47126
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 63153340 and ends at 63157542 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS27L (15q22.2) / CSDE1 (1p13.2)RPS27L (15q22.2) / RIC1 (9p24.1)RPS27L (15q22.2) / UBR2 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS27L   18476
Cards
Entrez_Gene (NCBI)RPS27L  51065  ribosomal protein S27 like
Aliases
GeneCards (Weizmann)RPS27L
Ensembl hg19 (Hinxton)ENSG00000185088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185088 [Gene_View]  chr15:63153340-63157542 [Contig_View]  RPS27L [Vega]
ICGC DataPortalENSG00000185088
TCGA cBioPortalRPS27L
AceView (NCBI)RPS27L
Genatlas (Paris)RPS27L
WikiGenes51065
SOURCE (Princeton)RPS27L
Genetics Home Reference (NIH)RPS27L
Genomic and cartography
GoldenPath hg38 (UCSC)RPS27L  -     chr15:63153340-63157542 -  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS27L  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblRPS27L - 15q22.2 [CytoView hg19]  RPS27L - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBIRPS27L [Mapview hg19]  RPS27L [Mapview hg38]
OMIM612055   
Gene and transcription
Genbank (Entrez)AF070668 AK024591 AW013916 BC003667 BC031307
RefSeq transcript (Entrez)NM_015920
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS27L
Cluster EST : UnigeneHs.108957 [ NCBI ]
CGAP (NCI)Hs.108957
Alternative Splicing GalleryENSG00000185088
Gene ExpressionRPS27L [ NCBI-GEO ]   RPS27L [ EBI - ARRAY_EXPRESS ]   RPS27L [ SEEK ]   RPS27L [ MEM ]
Gene Expression Viewer (FireBrowse)RPS27L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51065
GTEX Portal (Tissue expression)RPS27L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ71UM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ71UM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ71UM5
Splice isoforms : SwissVarQ71UM5
PhosPhoSitePlusQ71UM5
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S27E (PS01168)   
Domains : Interpro (EBI)Ribosomal_S27e    Ribosomal_S27e_Zn-bd_dom    Ribosomal_zn-bd   
Domain families : Pfam (Sanger)Ribosomal_S27e (PF01667)   
Domain families : Pfam (NCBI)pfam01667   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S27e (PD004466)   
Conserved Domain (NCBI)RPS27L
DMDM Disease mutations51065
Blocks (Seattle)RPS27L
SuperfamilyQ71UM5
Human Protein AtlasENSG00000185088
Peptide AtlasQ71UM5
HPRD18003
IPIIPI00746004   IPI00420117   
Protein Interaction databases
DIP (DOE-UCLA)Q71UM5
IntAct (EBI)Q71UM5
FunCoupENSG00000185088
BioGRIDRPS27L
STRING (EMBL)RPS27L
ZODIACRPS27L
Ontologies - Pathways
QuickGOQ71UM5
Ontology : AmiGOribosomal small subunit assembly  RNA binding  structural constituent of ribosome  protein binding  nucleus  DNA repair  translation  activation of cysteine-type endopeptidase activity involved in apoptotic process  cellular response to DNA damage stimulus  translation activator activity  cysteine-type endopeptidase activator activity involved in apoptotic process  cytosolic small ribosomal subunit  mitotic G1 DNA damage checkpoint  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  positive regulation of translation  metal ion binding  
Ontology : EGO-EBIribosomal small subunit assembly  RNA binding  structural constituent of ribosome  protein binding  nucleus  DNA repair  translation  activation of cysteine-type endopeptidase activity involved in apoptotic process  cellular response to DNA damage stimulus  translation activator activity  cysteine-type endopeptidase activator activity involved in apoptotic process  cytosolic small ribosomal subunit  mitotic G1 DNA damage checkpoint  intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  positive regulation of translation  metal ion binding  
Pathways : KEGGRibosome   
NDEx NetworkRPS27L
Atlas of Cancer Signalling NetworkRPS27L
Wikipedia pathwaysRPS27L
Orthology - Evolution
OrthoDB51065
GeneTree (enSembl)ENSG00000185088
Phylogenetic Trees/Animal Genes : TreeFamRPS27L
HOVERGENQ71UM5
HOGENOMQ71UM5
Homologs : HomoloGeneRPS27L
Homology/Alignments : Family Browser (UCSC)RPS27L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS27L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS27L
dbVarRPS27L
ClinVarRPS27L
1000_GenomesRPS27L 
Exome Variant ServerRPS27L
ExAC (Exome Aggregation Consortium)RPS27L (select the gene name)
Genetic variants : HAPMAP51065
Genomic Variants (DGV)RPS27L [DGVbeta]
DECIPHERRPS27L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS27L 
Mutations
ICGC Data PortalRPS27L 
TCGA Data PortalRPS27L 
Broad Tumor PortalRPS27L
OASIS PortalRPS27L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS27L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS27L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS27L
DgiDB (Drug Gene Interaction Database)RPS27L
DoCM (Curated mutations)RPS27L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS27L (select a term)
intoGenRPS27L
Cancer3DRPS27L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612055   
Orphanet
MedgenRPS27L
Genetic Testing Registry RPS27L
NextProtQ71UM5 [Medical]
TSGene51065
GENETestsRPS27L
Target ValidationRPS27L
Huge Navigator RPS27L [HugePedia]
snp3D : Map Gene to Disease51065
BioCentury BCIQRPS27L
ClinGenRPS27L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51065
Chemical/Pharm GKB GenePA38546
Clinical trialRPS27L
Miscellaneous
canSAR (ICR)RPS27L (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS27L
EVEXRPS27L
GoPubMedRPS27L
iHOPRPS27L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:56 CEST 2017

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