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RPS28 (ribosomal protein S28)

Identity

Alias_symbol (synonym)S28
Other aliasDBA15
HGNC (Hugo) RPS28
LocusID (NCBI) 6234
Atlas_Id 72867
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8321500 and ends at 8322396 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS28   10418
Cards
Entrez_Gene (NCBI)RPS28  6234  ribosomal protein S28
AliasesDBA15; S28
GeneCards (Weizmann)RPS28
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:8321500-8322396 [Contig_View]  RPS28 [Vega]
TCGA cBioPortalRPS28
AceView (NCBI)RPS28
Genatlas (Paris)RPS28
WikiGenes6234
SOURCE (Princeton)RPS28
Genetics Home Reference (NIH)RPS28
Genomic and cartography
GoldenPath hg38 (UCSC)RPS28  -     chr19:8321500-8322396 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS28  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblRPS28 - 19p13.2 [CytoView hg19]  RPS28 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIRPS28 [Mapview hg19]  RPS28 [Mapview hg38]
OMIM603685   606164   
Gene and transcription
Genbank (Entrez)AB055779 AK293636 AK301638 AK311925 AU126783
RefSeq transcript (Entrez)NM_001031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS28
Cluster EST : UnigeneHs.322473 [ NCBI ]
CGAP (NCI)Hs.322473
Gene ExpressionRPS28 [ NCBI-GEO ]   RPS28 [ EBI - ARRAY_EXPRESS ]   RPS28 [ SEEK ]   RPS28 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6234
GTEX Portal (Tissue expression)RPS28
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62857
Splice isoforms : SwissVarP62857
PhosPhoSitePlusP62857
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S28E (PS00961)   
Domains : Interpro (EBI)NA-bd_OB-fold    Ribosomal_S28e    Ribosomal_S28e_CS   
Domain families : Pfam (Sanger)Ribosomal_S28e (PF01200)   
Domain families : Pfam (NCBI)pfam01200   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S28e (PD005541)   
Conserved Domain (NCBI)RPS28
DMDM Disease mutations6234
Blocks (Seattle)RPS28
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62857
Peptide AtlasP62857
HPRD04731
IPIIPI00719622   IPI00909659   IPI00910222   
Protein Interaction databases
DIP (DOE-UCLA)P62857
IntAct (EBI)P62857
BioGRIDRPS28
STRING (EMBL)RPS28
ZODIACRPS28
Ontologies - Pathways
QuickGOP62857
Ontology : AmiGOribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  maturation of SSU-rRNA  ribosome biogenesis  ribosomal small subunit biogenesis  extracellular exosome  
Ontology : EGO-EBIribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  maturation of SSU-rRNA  ribosome biogenesis  ribosomal small subunit biogenesis  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS28
Atlas of Cancer Signalling NetworkRPS28
Wikipedia pathwaysRPS28
Orthology - Evolution
OrthoDB6234
Phylogenetic Trees/Animal Genes : TreeFamRPS28
HOVERGENP62857
HOGENOMP62857
Homologs : HomoloGeneRPS28
Homology/Alignments : Family Browser (UCSC)RPS28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS28
dbVarRPS28
ClinVarRPS28
1000_GenomesRPS28 
Exome Variant ServerRPS28
ExAC (Exome Aggregation Consortium)RPS28 (select the gene name)
Genetic variants : HAPMAP6234
Genomic Variants (DGV)RPS28 [DGVbeta]
DECIPHERRPS28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS28 
Mutations
ICGC Data PortalRPS28 
TCGA Data PortalRPS28 
Broad Tumor PortalRPS28
OASIS PortalRPS28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS28
DgiDB (Drug Gene Interaction Database)RPS28
DoCM (Curated mutations)RPS28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS28 (select a term)
intoGenRPS28
Cancer3DRPS28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603685    606164   
Orphanet429   
MedgenRPS28
Genetic Testing Registry RPS28
NextProtP62857 [Medical]
TSGene6234
GENETestsRPS28
Target ValidationRPS28
Huge Navigator RPS28 [HugePedia]
snp3D : Map Gene to Disease6234
BioCentury BCIQRPS28
ClinGenRPS28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6234
Chemical/Pharm GKB GenePA34825
Clinical trialRPS28
Miscellaneous
canSAR (ICR)RPS28 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS28
EVEXRPS28
GoPubMedRPS28
iHOPRPS28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:29 CEST 2017

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