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RPS29 (ribosomal protein S29)

Identity

Alias_symbol (synonym)S29
Other aliasDBA13
HGNC (Hugo) RPS29
LocusID (NCBI) 6235
Atlas_Id 42163
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 49576672 and ends at 49586416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS29 (14q21.3) / POLE2 (14q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Diamond-Blackfan anemia (DBA)


External links

Nomenclature
HGNC (Hugo)RPS29   10419
Cards
Entrez_Gene (NCBI)RPS29  6235  ribosomal protein S29
AliasesDBA13; S29
GeneCards (Weizmann)RPS29
Ensembl hg19 (Hinxton)ENSG00000213741 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213741 [Gene_View]  chr14:49576672-49586416 [Contig_View]  RPS29 [Vega]
ICGC DataPortalENSG00000213741
TCGA cBioPortalRPS29
AceView (NCBI)RPS29
Genatlas (Paris)RPS29
WikiGenes6235
SOURCE (Princeton)RPS29
Genetics Home Reference (NIH)RPS29
Genomic and cartography
GoldenPath hg38 (UCSC)RPS29  -     chr14:49576672-49586416 -  14q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS29  -     14q21.3   [Description]    (hg19-Feb_2009)
EnsemblRPS29 - 14q21.3 [CytoView hg19]  RPS29 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBIRPS29 [Mapview hg19]  RPS29 [Mapview hg38]
OMIM603633   615909   
Gene and transcription
Genbank (Entrez)AA410525 AB055780 AK026649 AK307833 BC015974
RefSeq transcript (Entrez)NM_001030001 NM_001032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS29
Cluster EST : UnigeneHs.156367 [ NCBI ]
CGAP (NCI)Hs.156367
Alternative Splicing GalleryENSG00000213741
Gene ExpressionRPS29 [ NCBI-GEO ]   RPS29 [ EBI - ARRAY_EXPRESS ]   RPS29 [ SEEK ]   RPS29 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6235
GTEX Portal (Tissue expression)RPS29
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62273   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62273  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62273
Splice isoforms : SwissVarP62273
PhosPhoSitePlusP62273
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S14 (PS00527)   
Domains : Interpro (EBI)Ribosomal_S14    Ribosomal_S14_CS   
Domain families : Pfam (Sanger)Ribosomal_S14 (PF00253)   
Domain families : Pfam (NCBI)pfam00253   
Conserved Domain (NCBI)RPS29
DMDM Disease mutations6235
Blocks (Seattle)RPS29
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62273
Human Protein AtlasENSG00000213741
Peptide AtlasP62273
HPRD04698
IPIIPI00182289   IPI00639942   
Protein Interaction databases
DIP (DOE-UCLA)P62273
IntAct (EBI)P62273
FunCoupENSG00000213741
BioGRIDRPS29
STRING (EMBL)RPS29
ZODIACRPS29
Ontologies - Pathways
QuickGOP62273
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  zinc ion binding  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  zinc ion binding  small ribosomal subunit  viral transcription  cytosolic small ribosomal subunit  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS29
Atlas of Cancer Signalling NetworkRPS29
Wikipedia pathwaysRPS29
Orthology - Evolution
OrthoDB6235
GeneTree (enSembl)ENSG00000213741
Phylogenetic Trees/Animal Genes : TreeFamRPS29
HOVERGENP62273
HOGENOMP62273
Homologs : HomoloGeneRPS29
Homology/Alignments : Family Browser (UCSC)RPS29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS29
dbVarRPS29
ClinVarRPS29
1000_GenomesRPS29 
Exome Variant ServerRPS29
ExAC (Exome Aggregation Consortium)RPS29 (select the gene name)
Genetic variants : HAPMAP6235
Genomic Variants (DGV)RPS29 [DGVbeta]
DECIPHERRPS29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS29 
Mutations
ICGC Data PortalRPS29 
TCGA Data PortalRPS29 
Broad Tumor PortalRPS29
OASIS PortalRPS29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS29
DgiDB (Drug Gene Interaction Database)RPS29
DoCM (Curated mutations)RPS29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS29 (select a term)
intoGenRPS29
Cancer3DRPS29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603633    615909   
Orphanet429   
MedgenRPS29
Genetic Testing Registry RPS29
NextProtP62273 [Medical]
TSGene6235
GENETestsRPS29
Target ValidationRPS29
Huge Navigator RPS29 [HugePedia]
snp3D : Map Gene to Disease6235
BioCentury BCIQRPS29
ClinGenRPS29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6235
Chemical/Pharm GKB GenePA34826
Clinical trialRPS29
Miscellaneous
canSAR (ICR)RPS29 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS29
EVEXRPS29
GoPubMedRPS29
iHOPRPS29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:53:56 CEST 2017

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