Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS3A (ribosomal protein S3A)

Identity

Alias_namesMFTL
Alias_symbol (synonym)S3A
Other aliasFTE1
HGNC (Hugo) RPS3A
LocusID (NCBI) 6189
Atlas_Id 45670
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152020725 and ends at 152025804 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS3A   10421
Cards
Entrez_Gene (NCBI)RPS3A  6189  ribosomal protein S3A
AliasesFTE1; MFTL; S3A
GeneCards (Weizmann)RPS3A
Ensembl hg19 (Hinxton)ENSG00000145425 [Gene_View]  chr4:152020725-152025804 [Contig_View]  RPS3A [Vega]
Ensembl hg38 (Hinxton)ENSG00000145425 [Gene_View]  chr4:152020725-152025804 [Contig_View]  RPS3A [Vega]
ICGC DataPortalENSG00000145425
TCGA cBioPortalRPS3A
AceView (NCBI)RPS3A
Genatlas (Paris)RPS3A
WikiGenes6189
SOURCE (Princeton)RPS3A
Genetics Home Reference (NIH)RPS3A
Genomic and cartography
GoldenPath hg19 (UCSC)RPS3A  -     chr4:152020725-152025804 +  4q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS3A  -     4q31.3   [Description]    (hg38-Dec_2013)
EnsemblRPS3A - 4q31.3 [CytoView hg19]  RPS3A - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIRPS3A [Mapview hg19]  RPS3A [Mapview hg38]
OMIM180478   
Gene and transcription
Genbank (Entrez)AI038646 AK129825 AK291075 AK296121 AK308947
RefSeq transcript (Entrez)NM_001006 NM_001267699
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)RPS3A
Cluster EST : UnigeneHs.356572 [ NCBI ]
CGAP (NCI)Hs.356572
Alternative Splicing GalleryENSG00000145425
Gene ExpressionRPS3A [ NCBI-GEO ]   RPS3A [ EBI - ARRAY_EXPRESS ]   RPS3A [ SEEK ]   RPS3A [ MEM ]
Gene Expression Viewer (FireBrowse)RPS3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6189
GTEX Portal (Tissue expression)RPS3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61247   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61247  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61247
Splice isoforms : SwissVarP61247
PhosPhoSitePlusP61247
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S3AE (PS01191)   
Domains : Interpro (EBI)Ribosomal_S1/3_euk    Ribosomal_S3Ae    Ribosomal_S3Ae_CS   
Domain families : Pfam (Sanger)Ribosomal_S3Ae (PF01015)   
Domain families : Pfam (NCBI)pfam01015   
Conserved Domain (NCBI)RPS3A
DMDM Disease mutations6189
Blocks (Seattle)RPS3A
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX   
SuperfamilyP61247
Human Protein AtlasENSG00000145425
Peptide AtlasP61247
HPRD01606
IPIIPI00419880   IPI00967073   IPI00963912   IPI00966516   IPI00965481   IPI00967388   IPI00964983   IPI00968146   IPI00967641   IPI00967897   IPI00965772   IPI00966860   
Protein Interaction databases
DIP (DOE-UCLA)P61247
IntAct (EBI)P61247
FunCoupENSG00000145425
BioGRIDRPS3A
STRING (EMBL)RPS3A
ZODIACRPS3A
Ontologies - Pathways
QuickGOP61247
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  cytosol  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic small ribosomal subunit  cell differentiation  intracellular ribonucleoprotein complex  negative regulation of apoptotic process  poly(A) RNA binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  cytosol  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic small ribosomal subunit  cell differentiation  intracellular ribonucleoprotein complex  negative regulation of apoptotic process  poly(A) RNA binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS3A
Atlas of Cancer Signalling NetworkRPS3A
Wikipedia pathwaysRPS3A
Orthology - Evolution
OrthoDB6189
GeneTree (enSembl)ENSG00000145425
Phylogenetic Trees/Animal Genes : TreeFamRPS3A
HOVERGENP61247
HOGENOMP61247
Homologs : HomoloGeneRPS3A
Homology/Alignments : Family Browser (UCSC)RPS3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS3A
dbVarRPS3A
ClinVarRPS3A
1000_GenomesRPS3A 
Exome Variant ServerRPS3A
ExAC (Exome Aggregation Consortium)RPS3A (select the gene name)
Genetic variants : HAPMAP6189
Genomic Variants (DGV)RPS3A [DGVbeta]
DECIPHER (Syndromes)4:152020725-152025804  ENSG00000145425
CONAN: Copy Number AnalysisRPS3A 
Mutations
ICGC Data PortalRPS3A 
TCGA Data PortalRPS3A 
Broad Tumor PortalRPS3A
OASIS PortalRPS3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS3A
DgiDB (Drug Gene Interaction Database)RPS3A
DoCM (Curated mutations)RPS3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS3A (select a term)
intoGenRPS3A
Cancer3DRPS3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180478   
Orphanet
MedgenRPS3A
Genetic Testing Registry RPS3A
NextProtP61247 [Medical]
TSGene6189
GENETestsRPS3A
Huge Navigator RPS3A [HugePedia]
snp3D : Map Gene to Disease6189
BioCentury BCIQRPS3A
ClinGenRPS3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6189
Chemical/Pharm GKB GenePA34830
Clinical trialRPS3A
Miscellaneous
canSAR (ICR)RPS3A (select the gene name)
Probes
Litterature
PubMed96 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS3A
EVEXRPS3A
GoPubMedRPS3A
iHOPRPS3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:44 CET 2017

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