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RPS4Y2 (ribosomal protein S4, Y-linked 2)

Identity

Alias_namesRPS4Y2P
ribosomal protein S4, Y-linked 2 pseudogene
Other alias
HGNC (Hugo) RPS4Y2
LocusID (NCBI) 140032
Atlas_Id 72871
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 20756068 and ends at 20781032 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS4Y2   18501
Cards
Entrez_Gene (NCBI)RPS4Y2  140032  ribosomal protein S4, Y-linked 2
AliasesRPS4Y2P
GeneCards (Weizmann)RPS4Y2
Ensembl hg19 (Hinxton)ENSG00000280969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280969 [Gene_View]  chrY:20756068-20781032 [Contig_View]  RPS4Y2 [Vega]
ICGC DataPortalENSG00000280969
TCGA cBioPortalRPS4Y2
AceView (NCBI)RPS4Y2
Genatlas (Paris)RPS4Y2
WikiGenes140032
SOURCE (Princeton)RPS4Y2
Genetics Home Reference (NIH)RPS4Y2
Genomic and cartography
GoldenPath hg38 (UCSC)RPS4Y2  -     chrY:20756068-20781032 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS4Y2  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblRPS4Y2 - Yq11.223 [CytoView hg19]  RPS4Y2 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRPS4Y2 [Mapview hg19]  RPS4Y2 [Mapview hg38]
OMIM400030   415000   
Gene and transcription
Genbank (Entrez)AF497481
RefSeq transcript (Entrez)NM_001039567
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS4Y2
Cluster EST : UnigeneHs.367761 [ NCBI ]
CGAP (NCI)Hs.367761
Alternative Splicing GalleryENSG00000280969
Gene ExpressionRPS4Y2 [ NCBI-GEO ]   RPS4Y2 [ EBI - ARRAY_EXPRESS ]   RPS4Y2 [ SEEK ]   RPS4Y2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS4Y2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140032
GTEX Portal (Tissue expression)RPS4Y2
Human Protein AtlasENSG00000280969-RPS4Y2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD47
Splice isoforms : SwissVarQ8TD47
PhosPhoSitePlusQ8TD47
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S4E (PS00528)    S4 (PS50889)   
Domains : Interpro (EBI)40S_S4_C    KOW    Ribosomal_S4e    Ribosomal_S4e_central_region    Ribosomal_S4e_N    Ribosomal_S4e_N_CS    S4_RNA-bd   
Domain families : Pfam (Sanger)40S_S4_C (PF16121)    KOW (PF00467)    Ribosomal_S4e (PF00900)    RS4NT (PF08071)   
Domain families : Pfam (NCBI)pfam16121    pfam00467    pfam00900    pfam08071   
Domain structure : Prodom (Prabi Lyon)Ribosomal_S4e_central (PD002667)   
Conserved Domain (NCBI)RPS4Y2
DMDM Disease mutations140032
Blocks (Seattle)RPS4Y2
SuperfamilyQ8TD47
Human Protein Atlas [tissue]ENSG00000280969-RPS4Y2 [tissue]
Peptide AtlasQ8TD47
HPRD15960
IPIIPI00219894   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD47
IntAct (EBI)Q8TD47
FunCoupENSG00000280969
BioGRIDRPS4Y2
STRING (EMBL)RPS4Y2
ZODIACRPS4Y2
Ontologies - Pathways
QuickGOQ8TD47
Ontology : AmiGOmolecular_function  structural constituent of ribosome  cellular_component  translation  biological_process  rRNA binding  cytosolic small ribosomal subunit  
Ontology : EGO-EBImolecular_function  structural constituent of ribosome  cellular_component  translation  biological_process  rRNA binding  cytosolic small ribosomal subunit  
NDEx NetworkRPS4Y2
Atlas of Cancer Signalling NetworkRPS4Y2
Wikipedia pathwaysRPS4Y2
Orthology - Evolution
OrthoDB140032
GeneTree (enSembl)ENSG00000280969
Phylogenetic Trees/Animal Genes : TreeFamRPS4Y2
HOVERGENQ8TD47
HOGENOMQ8TD47
Homologs : HomoloGeneRPS4Y2
Homology/Alignments : Family Browser (UCSC)RPS4Y2
Gene fusions - Rearrangements
Tumor Fusion PortalRPS4Y2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS4Y2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS4Y2
dbVarRPS4Y2
ClinVarRPS4Y2
1000_GenomesRPS4Y2 
Exome Variant ServerRPS4Y2
ExAC (Exome Aggregation Consortium)ENSG00000280969
GNOMAD BrowserENSG00000280969
Genetic variants : HAPMAP140032
Genomic Variants (DGV)RPS4Y2 [DGVbeta]
DECIPHERRPS4Y2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS4Y2 
Mutations
ICGC Data PortalRPS4Y2 
TCGA Data PortalRPS4Y2 
Broad Tumor PortalRPS4Y2
OASIS PortalRPS4Y2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS4Y2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS4Y2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS4Y2
DgiDB (Drug Gene Interaction Database)RPS4Y2
DoCM (Curated mutations)RPS4Y2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS4Y2 (select a term)
intoGenRPS4Y2
Cancer3DRPS4Y2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400030    415000   
Orphanet
DisGeNETRPS4Y2
MedgenRPS4Y2
Genetic Testing Registry RPS4Y2
NextProtQ8TD47 [Medical]
TSGene140032
GENETestsRPS4Y2
Target ValidationRPS4Y2
Huge Navigator RPS4Y2 [HugePedia]
snp3D : Map Gene to Disease140032
BioCentury BCIQRPS4Y2
ClinGenRPS4Y2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140032
Chemical/Pharm GKB GenePA38563
Clinical trialRPS4Y2
Miscellaneous
canSAR (ICR)RPS4Y2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS4Y2
EVEXRPS4Y2
GoPubMedRPS4Y2
iHOPRPS4Y2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:11 CET 2017

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