Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPS5 (ribosomal protein S5)

Identity

Other namesS5
HGNC (Hugo) RPS5
LocusID (NCBI) 6193
Location 19q13.43
Location_base_pair Starts at 58898636 and ends at 58906171 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPS5   10426
Entrez_Gene (NCBI)RPS5  6193  ribosomal protein S5
Cards
GeneCards (Weizmann)RPS5
Ensembl (Hinxton)ENSG00000083845 [Gene_View]  chr19:58898636-58906171 [Contig_View]  RPS5 [Vega]
AceView (NCBI)RPS5
Genatlas (Paris)RPS5
SOURCE (Stanford)NM_001009
Genomic and cartography
GoldenPath (UCSC)RPS5  -  19q13.43   chr19:58898636-58906171 +  19q13.43   [Description]    (hg19-Feb_2009)
EnsemblRPS5 - 19q13.43 [CytoView]
Mapping of homologs : NCBIRPS5 [Mapview]
OMIM603630   
Gene and transcription
Genbank (Entrez)AK223106 AK311938 BC015405 BC018151 BC018828
RefSeq transcript (SRS)NM_001009
RefSeq transcript (Entrez)NM_001009
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838501 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838501 NW_004078099
Consensus coding sequences : CCDS (NCBI)RPS5
Cluster EST : UnigeneHs.378103 [ SRS ] Hs.378103 [ NCBI ]
CGAP (NCI)Hs.378103
Alternative Splicing : Fast-db (Paris)GSHG0015280
Alternative Splicing GalleryENSG00000083845
Gene ExpressionRPS5 [ NCBI-GEO ]   RPS5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46782 (SRS) P46782 (Uniprot)
NextProtP46782
With graphics : InterProP46782
Splice isoforms : SwissVarP46782(Swissvar)
Domaine pattern : Prosite (SRS)RIBOSOMAL_S7 (PS00052)   
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S7 (PS00052)   
Domains : Interpro (SRS)Ribosomal_S5/S7    Ribosomal_S5/S7_euk/arc    Ribosomal_S7_CS    Ribosomal_S7_dom   
Domains : Interpro (EBI)Ribosomal_S5/S7    Ribosomal_S5/S7_euk/arc    Ribosomal_S7_CS    Ribosomal_S7_dom   
Related proteins : CluSTrP46782
Domain families : Pfam (SRS)Ribosomal_S7 (PF00177)   
Domain families : Pfam (Sanger)Ribosomal_S7 (PF00177)   
Domain families : Pfam (NCBI)pfam00177   
DMDM6193
Blocks (Seattle)P46782
Human Protein AtlasENSG00000083845
HPRD04695
IPIIPI00008433   
Protein Interaction databases
DIP (DOE-UCLA)P46782
IntAct (EBI)P46782
FunCoupENSG00000083845
REACTOMERPS5
Protein Interaction Database6193
BioGRIDRPS5
InParanoidP46782
Interologous Interaction database P46782
IntegromeDBRPS5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPS5
SNP (GeneSNP Utah)RPS5
SNP : HGBaseRPS5
Genetic variants : HAPMAPRPS5
Somatic Mutations in Cancer : COSMICRPS5 
CONAN: Copy Number AnalysisRPS5 
Mutations and Diseases : HGMDRPS5
OMIM603630   
GENETests603630   
Disease Genetic AssociationRPS5
Huge Navigator RPS5 [HugePedia]  RPS5 [HugeCancerGEM]
Genomic VariantsRPS5  RPS5 [DGVbeta]
snp3D : Map Gene to Disease6193
General knowledge
Homologs : HomoloGeneRPS5
Homology/Alignments : Family Browser (UCSC)RPS5
Phylogenetic Trees/Animal Genes : TreeFamRPS5
Chemical/Protein Interactions : CTD6193
Chemical/Pharm GKB GenePA34841
Clinical trialRPS5
Cancer Resource (Charite)ENSG00000083845
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  cytosol  translation  translation  translation  translation  translational initiation  translational initiation  translational elongation  translational termination  regulation of translational fidelity  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral reproduction  RNA metabolic process  mRNA metabolic process  viral infectious cycle  viral transcription  cytosolic small ribosomal subunit  ribonucleoprotein complex  cellular protein metabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  cytosol  translation  translation  translation  translation  translational initiation  translational initiation  translational elongation  translational termination  regulation of translational fidelity  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral reproduction  RNA metabolic process  mRNA metabolic process  viral infectious cycle  viral transcription  cytosolic small ribosomal subunit  ribonucleoprotein complex  cellular protein metabolic process  
Pathways : KEGGRibosome
Other databases
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
PubGeneRPS5
iHOPRPS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:34 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.