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RPS5 (ribosomal protein S5)

Identity

Alias_symbol (synonym)S5
Other alias
HGNC (Hugo) RPS5
LocusID (NCBI) 6193
Atlas_Id 42165
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58387269 and ends at 58394804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTG1 (17q25.3) / RPS5 (19q13.43)BRAP (12q24.12) / RPS5 (19q13.43)CD63 (12q13.2) / RPS5 (19q13.43)
CTDSP1 (2q35) / RPS5 (19q13.43)MRPS21 (1q21.2) / RPS5 (19q13.43)RPS5 (19q13.43) / CALD1 (7q33)
RPS5 (19q13.43) / HDAC1 (1p35.1)SPIN3 (Xp11.21) / RPS5 (19q13.43)RPS5 19q13.43 / CALD1 7q33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS5   10426
Cards
Entrez_Gene (NCBI)RPS5  6193  ribosomal protein S5
AliasesS5
GeneCards (Weizmann)RPS5
Ensembl hg19 (Hinxton)ENSG00000083845 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083845 [Gene_View]  chr19:58387269-58394804 [Contig_View]  RPS5 [Vega]
ICGC DataPortalENSG00000083845
TCGA cBioPortalRPS5
AceView (NCBI)RPS5
Genatlas (Paris)RPS5
WikiGenes6193
SOURCE (Princeton)RPS5
Genetics Home Reference (NIH)RPS5
Genomic and cartography
GoldenPath hg38 (UCSC)RPS5  -     chr19:58387269-58394804 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS5  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblRPS5 - 19q13.43 [CytoView hg19]  RPS5 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIRPS5 [Mapview hg19]  RPS5 [Mapview hg38]
OMIM603630   
Gene and transcription
Genbank (Entrez)AB209803 AK223106 AK311938 BC015405 BC018151
RefSeq transcript (Entrez)NM_001009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS5
Cluster EST : UnigeneHs.378103 [ NCBI ]
CGAP (NCI)Hs.378103
Alternative Splicing GalleryENSG00000083845
Gene ExpressionRPS5 [ NCBI-GEO ]   RPS5 [ EBI - ARRAY_EXPRESS ]   RPS5 [ SEEK ]   RPS5 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6193
GTEX Portal (Tissue expression)RPS5
Human Protein AtlasENSG00000083845-RPS5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46782   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46782  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46782
Splice isoforms : SwissVarP46782
PhosPhoSitePlusP46782
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S7 (PS00052)   
Domains : Interpro (EBI)Ribosomal_S5/S7    Ribosomal_S5/S7_euk/arc    Ribosomal_S7_CS    Ribosomal_S7_dom   
Domain families : Pfam (Sanger)Ribosomal_S7 (PF00177)   
Domain families : Pfam (NCBI)pfam00177   
Conserved Domain (NCBI)RPS5
DMDM Disease mutations6193
Blocks (Seattle)RPS5
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP46782
Human Protein Atlas [tissue]ENSG00000083845-RPS5 [tissue]
Peptide AtlasP46782
HPRD04695
IPIIPI00008433   
Protein Interaction databases
DIP (DOE-UCLA)P46782
IntAct (EBI)P46782
FunCoupENSG00000083845
BioGRIDRPS5
STRING (EMBL)RPS5
ZODIACRPS5
Ontologies - Pathways
QuickGOP46782
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  translational initiation  regulation of translational fidelity  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  intracellular ribonucleoprotein complex  extracellular matrix  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  RNA binding  mRNA binding  structural constituent of ribosome  protein binding  nucleoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translation  translational initiation  translational initiation  regulation of translational fidelity  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic small ribosomal subunit  intracellular ribonucleoprotein complex  extracellular matrix  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS5
Atlas of Cancer Signalling NetworkRPS5
Wikipedia pathwaysRPS5
Orthology - Evolution
OrthoDB6193
GeneTree (enSembl)ENSG00000083845
Phylogenetic Trees/Animal Genes : TreeFamRPS5
HOVERGENP46782
HOGENOMP46782
Homologs : HomoloGeneRPS5
Homology/Alignments : Family Browser (UCSC)RPS5
Gene fusions - Rearrangements
Fusion : MitelmanRPS5/CALD1 [19q13.43/7q33]  
Fusion: TCGARPS5 19q13.43 CALD1 7q33 PRAD
Fusion: Tumor Portal RPS5
Fusion Cancer (Beijing)BRAP [12q24.12]  -  RPS5 [19q13.43]  [FUSC002125]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS5
dbVarRPS5
ClinVarRPS5
1000_GenomesRPS5 
Exome Variant ServerRPS5
ExAC (Exome Aggregation Consortium)ENSG00000083845
GNOMAD BrowserENSG00000083845
Genetic variants : HAPMAP6193
Genomic Variants (DGV)RPS5 [DGVbeta]
DECIPHERRPS5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS5 
Mutations
ICGC Data PortalRPS5 
TCGA Data PortalRPS5 
Broad Tumor PortalRPS5
OASIS PortalRPS5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS5
DgiDB (Drug Gene Interaction Database)RPS5
DoCM (Curated mutations)RPS5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS5 (select a term)
intoGenRPS5
Cancer3DRPS5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603630   
Orphanet
MedgenRPS5
Genetic Testing Registry RPS5
NextProtP46782 [Medical]
TSGene6193
GENETestsRPS5
Target ValidationRPS5
Huge Navigator RPS5 [HugePedia]
snp3D : Map Gene to Disease6193
BioCentury BCIQRPS5
ClinGenRPS5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6193
Chemical/Pharm GKB GenePA34841
Clinical trialRPS5
Miscellaneous
canSAR (ICR)RPS5 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS5
EVEXRPS5
GoPubMedRPS5
iHOPRPS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:09:21 CET 2017

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