Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS6KA2-IT1 (RPS6KA2 intronic transcript 1)

Identity

Alias_namesRPS6KA2 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) RPS6KA2-IT1
LocusID (NCBI) 100874353
Atlas_Id 72873
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 166460663 and ends at 166465383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS6KA2-IT1   41378
Cards
Entrez_Gene (NCBI)RPS6KA2-IT1  100874353  RPS6KA2 intronic transcript 1
Aliases
GeneCards (Weizmann)RPS6KA2-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:166460663-166465383 [Contig_View]  RPS6KA2-IT1 [Vega]
TCGA cBioPortalRPS6KA2-IT1
AceView (NCBI)RPS6KA2-IT1
Genatlas (Paris)RPS6KA2-IT1
WikiGenes100874353
SOURCE (Princeton)RPS6KA2-IT1
Genetics Home Reference (NIH)RPS6KA2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)RPS6KA2-IT1  -     chr6:166460663-166465383 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS6KA2-IT1  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblRPS6KA2-IT1 - 6q27 [CytoView hg19]  RPS6KA2-IT1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIRPS6KA2-IT1 [Mapview hg19]  RPS6KA2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW992696
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS6KA2-IT1
Cluster EST : UnigeneHs.675698 [ NCBI ]
CGAP (NCI)Hs.675698
Gene ExpressionRPS6KA2-IT1 [ NCBI-GEO ]   RPS6KA2-IT1 [ EBI - ARRAY_EXPRESS ]   RPS6KA2-IT1 [ SEEK ]   RPS6KA2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS6KA2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874353
GTEX Portal (Tissue expression)RPS6KA2-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPS6KA2-IT1
DMDM Disease mutations100874353
Blocks (Seattle)RPS6KA2-IT1
Protein Interaction databases
BioGRIDRPS6KA2-IT1
STRING (EMBL)RPS6KA2-IT1
ZODIACRPS6KA2-IT1
Ontologies - Pathways
Huge Navigator RPS6KA2-IT1 [HugePedia]
snp3D : Map Gene to Disease100874353
BioCentury BCIQRPS6KA2-IT1
ClinGenRPS6KA2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874353
Clinical trialRPS6KA2-IT1
Miscellaneous
canSAR (ICR)RPS6KA2-IT1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS6KA2-IT1
EVEXRPS6KA2-IT1
GoPubMedRPS6KA2-IT1
iHOPRPS6KA2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:27:40 CEST 2018

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