Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPS6KL1 (ribosomal protein S6 kinase like 1)

Identity

Alias_namesribosomal protein S6 kinase-like 1
Alias_symbol (synonym)MGC11287
Other aliasRSKL2
HGNC (Hugo) RPS6KL1
LocusID (NCBI) 83694
Atlas_Id 43483
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75370657 and ends at 75389145 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPS6KL1 (14q24.3) / PSMA7 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS6KL1   20222
Cards
Entrez_Gene (NCBI)RPS6KL1  83694  ribosomal protein S6 kinase like 1
AliasesRSKL2
GeneCards (Weizmann)RPS6KL1
Ensembl hg19 (Hinxton)ENSG00000198208 [Gene_View]  chr14:75370657-75389145 [Contig_View]  RPS6KL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198208 [Gene_View]  chr14:75370657-75389145 [Contig_View]  RPS6KL1 [Vega]
ICGC DataPortalENSG00000198208
TCGA cBioPortalRPS6KL1
AceView (NCBI)RPS6KL1
Genatlas (Paris)RPS6KL1
WikiGenes83694
SOURCE (Princeton)RPS6KL1
Genetics Home Reference (NIH)RPS6KL1
Genomic and cartography
GoldenPath hg19 (UCSC)RPS6KL1  -     chr14:75370657-75389145 -  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPS6KL1  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblRPS6KL1 - 14q24.3 [CytoView hg19]  RPS6KL1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIRPS6KL1 [Mapview hg19]  RPS6KL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054800 AK093053 AK131532 AK226137 AK299846
RefSeq transcript (Entrez)NM_031464
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_034007 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)RPS6KL1
Cluster EST : UnigeneHs.414481 [ NCBI ]
CGAP (NCI)Hs.414481
Alternative Splicing GalleryENSG00000198208
Gene ExpressionRPS6KL1 [ NCBI-GEO ]   RPS6KL1 [ EBI - ARRAY_EXPRESS ]   RPS6KL1 [ SEEK ]   RPS6KL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS6KL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83694
GTEX Portal (Tissue expression)RPS6KL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6S9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6S9
Splice isoforms : SwissVarQ9Y6S9
PhosPhoSitePlusQ9Y6S9
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)Kinase-like_dom    MIT    Prot_kinase_dom   
Domain families : Pfam (Sanger)MIT (PF04212)    Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam04212    pfam00069   
Domain families : Smart (EMBL)MIT (SM00745)  
Conserved Domain (NCBI)RPS6KL1
DMDM Disease mutations83694
Blocks (Seattle)RPS6KL1
SuperfamilyQ9Y6S9
Human Protein AtlasENSG00000198208
Peptide AtlasQ9Y6S9
HPRD18004
IPIIPI00164583   IPI00479160   IPI00747638   IPI01025832   IPI01026392   IPI01025671   IPI01025574   IPI01025231   IPI01025339   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6S9
IntAct (EBI)Q9Y6S9
FunCoupENSG00000198208
BioGRIDRPS6KL1
STRING (EMBL)RPS6KL1
ZODIACRPS6KL1
Ontologies - Pathways
QuickGOQ9Y6S9
Ontology : AmiGOprotein serine/threonine kinase activity  ATP binding  cytoplasm  ribosome  protein phosphorylation  signal transduction  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein serine/threonine kinase activity  ATP binding  cytoplasm  ribosome  protein phosphorylation  signal transduction  intracellular membrane-bounded organelle  
NDEx NetworkRPS6KL1
Atlas of Cancer Signalling NetworkRPS6KL1
Wikipedia pathwaysRPS6KL1
Orthology - Evolution
OrthoDB83694
GeneTree (enSembl)ENSG00000198208
Phylogenetic Trees/Animal Genes : TreeFamRPS6KL1
HOVERGENQ9Y6S9
HOGENOMQ9Y6S9
Homologs : HomoloGeneRPS6KL1
Homology/Alignments : Family Browser (UCSC)RPS6KL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS6KL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS6KL1
dbVarRPS6KL1
ClinVarRPS6KL1
1000_GenomesRPS6KL1 
Exome Variant ServerRPS6KL1
ExAC (Exome Aggregation Consortium)RPS6KL1 (select the gene name)
Genetic variants : HAPMAP83694
Genomic Variants (DGV)RPS6KL1 [DGVbeta]
DECIPHER (Syndromes)14:75370657-75389145  ENSG00000198208
CONAN: Copy Number AnalysisRPS6KL1 
Mutations
ICGC Data PortalRPS6KL1 
TCGA Data PortalRPS6KL1 
Broad Tumor PortalRPS6KL1
OASIS PortalRPS6KL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS6KL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS6KL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS6KL1
DgiDB (Drug Gene Interaction Database)RPS6KL1
DoCM (Curated mutations)RPS6KL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS6KL1 (select a term)
intoGenRPS6KL1
Cancer3DRPS6KL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPS6KL1
Genetic Testing Registry RPS6KL1
NextProtQ9Y6S9 [Medical]
TSGene83694
GENETestsRPS6KL1
Huge Navigator RPS6KL1 [HugePedia]
snp3D : Map Gene to Disease83694
BioCentury BCIQRPS6KL1
ClinGenRPS6KL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83694
Chemical/Pharm GKB GenePA134868364
Clinical trialRPS6KL1
Miscellaneous
canSAR (ICR)RPS6KL1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS6KL1
EVEXRPS6KL1
GoPubMedRPS6KL1
iHOPRPS6KL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:25:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.