Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPS7 (ribosomal protein S7)

Identity

Other aliasDBA8
S7
HGNC (Hugo) RPS7
LocusID (NCBI) 6201
Atlas_Id 56722
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3575263 and ends at 3580919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP6V0D1 (16q22.1) / RPS7 (2p25.3)RPS7 (2p25.3) / TONSL (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Diamond-Blackfan anemia (DBA)


External links

Nomenclature
HGNC (Hugo)RPS7   10440
Cards
Entrez_Gene (NCBI)RPS7  6201  ribosomal protein S7
AliasesDBA8; S7
GeneCards (Weizmann)RPS7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:3575263-3580919 [Contig_View]  RPS7 [Vega]
TCGA cBioPortalRPS7
AceView (NCBI)RPS7
Genatlas (Paris)RPS7
WikiGenes6201
SOURCE (Princeton)RPS7
Genetics Home Reference (NIH)RPS7
Genomic and cartography
GoldenPath hg38 (UCSC)RPS7  -     chr2:3575263-3580919 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS7  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblRPS7 - 2p25.3 [CytoView hg19]  RPS7 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBIRPS7 [Mapview hg19]  RPS7 [Mapview hg38]
OMIM603658   612563   
Gene and transcription
Genbank (Entrez)AB209386 AF085824 AK092027 AK311794 BC002866
RefSeq transcript (Entrez)NM_001011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPS7
Cluster EST : UnigeneHs.646582 [ NCBI ]
CGAP (NCI)Hs.646582
Gene ExpressionRPS7 [ NCBI-GEO ]   RPS7 [ EBI - ARRAY_EXPRESS ]   RPS7 [ SEEK ]   RPS7 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6201
GTEX Portal (Tissue expression)RPS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62081   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62081  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62081
Splice isoforms : SwissVarP62081
PhosPhoSitePlusP62081
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S7E (PS00948)   
Domains : Interpro (EBI)Ribosomal_S7e   
Domain families : Pfam (Sanger)Ribosomal_S7e (PF01251)   
Domain families : Pfam (NCBI)pfam01251   
Conserved Domain (NCBI)RPS7
DMDM Disease mutations6201
Blocks (Seattle)RPS7
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP62081
Peptide AtlasP62081
IPIIPI00013415   IPI00983900   IPI00893703   
Protein Interaction databases
DIP (DOE-UCLA)P62081
IntAct (EBI)P62081
BioGRIDRPS7
STRING (EMBL)RPS7
ZODIACRPS7
Ontologies - Pathways
QuickGOP62081
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  neural tube closure  RNA binding  RNA binding  mRNA 3'-UTR binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  microtubule organizing center  cytosol  ribosome  focal adhesion  rRNA processing  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  poly(U) RNA binding  positive regulation of gene expression  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cell differentiation  intracellular ribonucleoprotein complex  extracellular matrix  ribosomal small subunit biogenesis  protein complex  mRNA 5'-UTR binding  protein stabilization  extracellular exosome  positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator  negative regulation of ubiquitin protein ligase activity  ubiquitin ligase inhibitor activity  negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  neural tube closure  RNA binding  RNA binding  mRNA 3'-UTR binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  microtubule organizing center  cytosol  ribosome  focal adhesion  rRNA processing  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  poly(U) RNA binding  positive regulation of gene expression  membrane  viral transcription  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  cell differentiation  intracellular ribonucleoprotein complex  extracellular matrix  ribosomal small subunit biogenesis  protein complex  mRNA 5'-UTR binding  protein stabilization  extracellular exosome  positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator  negative regulation of ubiquitin protein ligase activity  ubiquitin ligase inhibitor activity  negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Pathways : KEGGRibosome   
NDEx NetworkRPS7
Atlas of Cancer Signalling NetworkRPS7
Wikipedia pathwaysRPS7
Orthology - Evolution
OrthoDB6201
Phylogenetic Trees/Animal Genes : TreeFamRPS7
HOVERGENP62081
HOGENOMP62081
Homologs : HomoloGeneRPS7
Homology/Alignments : Family Browser (UCSC)RPS7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS7
dbVarRPS7
ClinVarRPS7
1000_GenomesRPS7 
Exome Variant ServerRPS7
ExAC (Exome Aggregation Consortium)RPS7 (select the gene name)
Genetic variants : HAPMAP6201
Genomic Variants (DGV)RPS7 [DGVbeta]
DECIPHERRPS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS7 
Mutations
ICGC Data PortalRPS7 
TCGA Data PortalRPS7 
Broad Tumor PortalRPS7
OASIS PortalRPS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS7
DgiDB (Drug Gene Interaction Database)RPS7
DoCM (Curated mutations)RPS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS7 (select a term)
intoGenRPS7
Cancer3DRPS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603658    612563   
Orphanet
MedgenRPS7
Genetic Testing Registry RPS7
NextProtP62081 [Medical]
TSGene6201
GENETestsRPS7
Target ValidationRPS7
Huge Navigator RPS7 [HugePedia]
snp3D : Map Gene to Disease6201
BioCentury BCIQRPS7
ClinGenRPS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6201
Chemical/Pharm GKB GenePA34855
Clinical trialRPS7
Miscellaneous
canSAR (ICR)RPS7 (select the gene name)
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS7
EVEXRPS7
GoPubMedRPS7
iHOPRPS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:00 CEST 2017

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