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RPS9 (ribosomal protein S9)

Identity

Alias_symbol (synonym)S9
Other alias
HGNC (Hugo) RPS9
LocusID (NCBI) 6203
Atlas_Id 42171
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 54200858 and ends at 54207647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHPS (19p13.2) / RPS9 (19q13.42)NPIPB7 (16q23.1) / RPS9 (19q13.42)RPS9 (19q13.42) / BAIAP2L1 (7q21.3)
RPS9 (19q13.42) / P4HB (17q25.3)RPS9 (19q13.42) / PSMD4 (1q21.3)RPS9 (19q13.42) / ZNF7 (8q24.3)
SRM (1p36.22) / RPS9 (19q13.42)ZNF721 (4p16.3) / RPS9 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPS9   10442
Cards
Entrez_Gene (NCBI)RPS9  6203  ribosomal protein S9
AliasesS9
GeneCards (Weizmann)RPS9
Ensembl hg19 (Hinxton)ENSG00000170889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170889 [Gene_View]  chr19:54200858-54207647 [Contig_View]  RPS9 [Vega]
ICGC DataPortalENSG00000170889
TCGA cBioPortalRPS9
AceView (NCBI)RPS9
Genatlas (Paris)RPS9
WikiGenes6203
SOURCE (Princeton)RPS9
Genetics Home Reference (NIH)RPS9
Genomic and cartography
GoldenPath hg38 (UCSC)RPS9  -     chr19:54200858-54207647 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPS9  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblRPS9 - 19q13.42 [CytoView hg19]  RPS9 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIRPS9 [Mapview hg19]  RPS9 [Mapview hg38]
OMIM603631   
Gene and transcription
Genbank (Entrez)AB055775 AK095055 AW163829 BC000802 BC007410
RefSeq transcript (Entrez)NM_001013 NM_001321701 NM_001321702 NM_001321704 NM_001321705 NM_001321706
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187693 NW_003571054 NW_003571055 NW_003571056 NW_003571057 NW_003571058 NW_003571059 NW_003571060 NW_003571061
Consensus coding sequences : CCDS (NCBI)RPS9
Cluster EST : UnigeneHs.546288 [ NCBI ]
CGAP (NCI)Hs.546288
Alternative Splicing GalleryENSG00000170889
Gene ExpressionRPS9 [ NCBI-GEO ]   RPS9 [ EBI - ARRAY_EXPRESS ]   RPS9 [ SEEK ]   RPS9 [ MEM ]
Gene Expression Viewer (FireBrowse)RPS9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6203
GTEX Portal (Tissue expression)RPS9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46781   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46781  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46781
Splice isoforms : SwissVarP46781
PhosPhoSitePlusP46781
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S4 (PS00632)    S4 (PS50889)   
Domains : Interpro (EBI)Ribosomal_S4/S9    Ribosomal_S4/S9_euk/arc    Ribosomal_S4/S9_N    Ribosomal_S4_CS    S4_RNA-bd   
Domain families : Pfam (Sanger)Ribosomal_S4 (PF00163)    S4 (PF01479)   
Domain families : Pfam (NCBI)pfam00163    pfam01479   
Domain families : Smart (EMBL)Ribosomal_S4 (SM01390)  S4 (SM00363)  
Conserved Domain (NCBI)RPS9
DMDM Disease mutations6203
Blocks (Seattle)RPS9
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5FLX    5T2C   
SuperfamilyP46781
Human Protein AtlasENSG00000170889
Peptide AtlasP46781
HPRD04696
IPIIPI00221088   IPI00847192   IPI00853062   IPI00879512   IPI00879238   IPI00925580   
Protein Interaction databases
DIP (DOE-UCLA)P46781
IntAct (EBI)P46781
FunCoupENSG00000170889
BioGRIDRPS9
STRING (EMBL)RPS9
ZODIACRPS9
Ontologies - Pathways
QuickGOP46781
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell proliferation  membrane  viral transcription  rRNA binding  cytosolic small ribosomal subunit  intracellular ribonucleoprotein complex  translation regulator activity  positive regulation of translational fidelity  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell proliferation  membrane  viral transcription  rRNA binding  cytosolic small ribosomal subunit  intracellular ribonucleoprotein complex  translation regulator activity  positive regulation of translational fidelity  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPS9
Atlas of Cancer Signalling NetworkRPS9
Wikipedia pathwaysRPS9
Orthology - Evolution
OrthoDB6203
GeneTree (enSembl)ENSG00000170889
Phylogenetic Trees/Animal Genes : TreeFamRPS9
HOVERGENP46781
HOGENOMP46781
Homologs : HomoloGeneRPS9
Homology/Alignments : Family Browser (UCSC)RPS9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPS9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPS9
dbVarRPS9
ClinVarRPS9
1000_GenomesRPS9 
Exome Variant ServerRPS9
ExAC (Exome Aggregation Consortium)RPS9 (select the gene name)
Genetic variants : HAPMAP6203
Genomic Variants (DGV)RPS9 [DGVbeta]
DECIPHERRPS9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPS9 
Mutations
ICGC Data PortalRPS9 
TCGA Data PortalRPS9 
Broad Tumor PortalRPS9
OASIS PortalRPS9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPS9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPS9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPS9
DgiDB (Drug Gene Interaction Database)RPS9
DoCM (Curated mutations)RPS9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPS9 (select a term)
intoGenRPS9
Cancer3DRPS9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603631   
Orphanet
MedgenRPS9
Genetic Testing Registry RPS9
NextProtP46781 [Medical]
TSGene6203
GENETestsRPS9
Target ValidationRPS9
Huge Navigator RPS9 [HugePedia]
snp3D : Map Gene to Disease6203
BioCentury BCIQRPS9
ClinGenRPS9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6203
Chemical/Pharm GKB GenePA34857
Clinical trialRPS9
Miscellaneous
canSAR (ICR)RPS9 (select the gene name)
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPS9
EVEXRPS9
GoPubMedRPS9
iHOPRPS9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:13:29 CEST 2017

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