Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPSA (ribosomal protein SA)

Identity

Alias (NCBI)37LRP
67LR
ICAS
LAMBR
LAMR1
LBP
LBP/p40
LRP
LRP/LR
NEM/1CHD4
SA
lamR
p40
HGNC (Hugo) RPSA
HGNC Alias symbLRP
37LRP
p40
SA
HGNC Previous nameLAMR1
HGNC Previous namelaminin receptor 1 (67kD, ribosomal protein SA)
LocusID (NCBI) 3921
Atlas_Id 41124
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 39406720 and ends at 39412541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP5D (19p13.3) / RPSA (3p22.1)CHD1 (5q15) / RPSA (3p22.1)CTNS (17p13.2) / RPSA (3p22.1)
INAFM1 (19q13.32) / RPSA (3p22.1)RPSA (3p22.1) / ULK4 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPSA   6502
LRG (Locus Reference Genomic)LRG_735
Cards
Entrez_Gene (NCBI)RPSA    ribosomal protein SA
Aliases37LRP; 67LR; ICAS; LAMBR; 
LAMR1; LBP; LBP/p40; LRP; LRP/LR; NEM/1CHD4; SA; lamR; p40
GeneCards (Weizmann)RPSA
Ensembl hg19 (Hinxton)ENSG00000168028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168028 [Gene_View]  ENSG00000168028 [Sequence]  chr3:39406720-39412541 [Contig_View]  RPSA [Vega]
ICGC DataPortalENSG00000168028
TCGA cBioPortalRPSA
AceView (NCBI)RPSA
Genatlas (Paris)RPSA
SOURCE (Princeton)RPSA
Genetics Home Reference (NIH)RPSA
Genomic and cartography
GoldenPath hg38 (UCSC)RPSA  -     chr3:39406720-39412541 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPSA  -     3p22.1   [Description]    (hg19-Feb_2009)
GoldenPathRPSA - 3p22.1 [CytoView hg19]  RPSA - 3p22.1 [CytoView hg38]
ImmunoBaseENSG00000168028
Genome Data Viewer NCBIRPSA [Mapview hg19]  
OMIM150370   271400   
Gene and transcription
Genbank (Entrez)AF503367 AJ572067 AK055991 BC005391 BC008867
RefSeq transcript (Entrez)NM_001304288 NM_002295
Consensus coding sequences : CCDS (NCBI)RPSA
Gene ExpressionRPSA [ NCBI-GEO ]   RPSA [ EBI - ARRAY_EXPRESS ]   RPSA [ SEEK ]   RPSA [ MEM ]
Gene Expression Viewer (FireBrowse)RPSA [ Firebrowse - Broad ]
GenevisibleExpression of RPSA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3921
GTEX Portal (Tissue expression)RPSA
Human Protein AtlasENSG00000168028-RPSA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08865   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08865  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08865
PhosPhoSitePlusP08865
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S2_1 (PS00962)    RIBOSOMAL_S2_2 (PS00963)   
Domains : Interpro (EBI)40S_ribosomal_SA    40S_SA_C    Ribosomal_S2    Ribosomal_S2_CS    Ribosomal_S2_euk    Ribosomal_S2_euk/arc    Ribosomal_S2_flav_dom_sf   
Domain families : Pfam (Sanger)40S_SA_C (PF16122)    Ribosomal_S2 (PF00318)   
Domain families : Pfam (NCBI)pfam16122    pfam00318   
Conserved Domain (NCBI)RPSA
PDB (RSDB)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB Europe3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB (PDBSum)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
PDB (IMB)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
Structural Biology KnowledgeBase3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
SCOP (Structural Classification of Proteins)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
CATH (Classification of proteins structures)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX    5LKS    5OA3    5T2C    5VYC    6EK0    6FEC    6G18    6G4S    6G51    6G53    6G5H    6G5I    6IP5    6IP6    6IP8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6YBD    6YBW    6Z6L    6Z6M    6Z6N    6ZLW    6ZM7    6ZME    6ZMI    6ZMO    6ZMT    6ZMW    6ZN5    6ZOJ    6ZOK    6ZON    6ZP4    6ZVH    6ZVJ    7A09    7K5I   
SuperfamilyP08865
AlphaFold pdb e-kbP08865   
Human Protein Atlas [tissue]ENSG00000168028-RPSA [tissue]
HPRD01038
Protein Interaction databases
DIP (DOE-UCLA)P08865
IntAct (EBI)P08865
BioGRIDRPSA
STRING (EMBL)RPSA
ZODIACRPSA
Ontologies - Pathways
QuickGOP08865
Ontology : AmiGOribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  virus receptor activity  cytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  laminin receptor activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  plasma membrane  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cell adhesion  membrane  viral transcription  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosome binding  laminin binding  viral entry into host cell  extracellular exosome  
Ontology : EGO-EBIribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  virus receptor activity  cytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  laminin receptor activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  plasma membrane  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cell adhesion  membrane  viral transcription  cytosolic ribosome  cytosolic small ribosomal subunit  cytosolic small ribosomal subunit  ribosome binding  laminin binding  viral entry into host cell  extracellular exosome  
Pathways : BIOCARTAPrion Pathway [Genes]   
Pathways : KEGGRibosome   
NDEx NetworkRPSA
Atlas of Cancer Signalling NetworkRPSA
Wikipedia pathwaysRPSA
Orthology - Evolution
OrthoDB3921
GeneTree (enSembl)ENSG00000168028
Phylogenetic Trees/Animal Genes : TreeFamRPSA
Homologs : HomoloGeneRPSA
Homology/Alignments : Family Browser (UCSC)RPSA
Gene fusions - Rearrangements
Fusion : QuiverRPSA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPSA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPSA
dbVarRPSA
ClinVarRPSA
MonarchRPSA
1000_GenomesRPSA 
Exome Variant ServerRPSA
GNOMAD BrowserENSG00000168028
Varsome BrowserRPSA
ACMGRPSA variants
VarityP08865
Genomic Variants (DGV)RPSA [DGVbeta]
DECIPHERRPSA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPSA 
Mutations
ICGC Data PortalRPSA 
TCGA Data PortalRPSA 
Broad Tumor PortalRPSA
OASIS PortalRPSA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPSA  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPSA
Mutations and Diseases : HGMDRPSA
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPSA
DgiDB (Drug Gene Interaction Database)RPSA
DoCM (Curated mutations)RPSA
CIViC (Clinical Interpretations of Variants in Cancer)RPSA
Cancer3DRPSA
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM150370    271400   
Orphanet14855   
DisGeNETRPSA
MedgenRPSA
Genetic Testing Registry RPSA
NextProtP08865 [Medical]
GENETestsRPSA
Target ValidationRPSA
Huge Navigator RPSA [HugePedia]
ClinGenRPSA
Clinical trials, drugs, therapy
MyCancerGenomeRPSA
Protein Interactions : CTDRPSA
Pharm GKB GenePA30287
PharosP08865
Clinical trialRPSA
Miscellaneous
canSAR (ICR)RPSA
HarmonizomeRPSA
DataMed IndexRPSA
Probes
Litterature
PubMed253 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:29:41 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.