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RPSA (ribosomal protein SA)

Identity

Alias_namesLAMR1
laminin receptor 1 (67kD
Alias_symbol (synonym)LRP
37LRP
p40
SA
Other alias67LR
ICAS
LAMBR
LBP
LBP/p40
LRP/LR
NEM/1CHD4
lamR
HGNC (Hugo) RPSA
LocusID (NCBI) 3921
Atlas_Id 41124
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 39448180 and ends at 39454032 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP5D (19p13.3) / RPSA (3p22.1)CHD1 (5q15) / RPSA (3p22.1)CTNS (17p13.2) / RPSA (3p22.1)
INAFM1 (19q13.32) / RPSA (3p22.1)RPSA (3p22.1) / ULK4 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPSA   6502
LRG (Locus Reference Genomic)LRG_735
Cards
Entrez_Gene (NCBI)RPSA  3921  ribosomal protein SA
Aliases37LRP; 67LR; ICAS; LAMBR; 
LAMR1; LBP; LBP/p40; LRP; LRP/LR; NEM/1CHD4; SA; lamR; p40
GeneCards (Weizmann)RPSA
Ensembl hg19 (Hinxton)ENSG00000168028 [Gene_View]  chr3:39448180-39454032 [Contig_View]  RPSA [Vega]
Ensembl hg38 (Hinxton)ENSG00000168028 [Gene_View]  chr3:39448180-39454032 [Contig_View]  RPSA [Vega]
ICGC DataPortalENSG00000168028
TCGA cBioPortalRPSA
AceView (NCBI)RPSA
Genatlas (Paris)RPSA
WikiGenes3921
SOURCE (Princeton)RPSA
Genetics Home Reference (NIH)RPSA
Genomic and cartography
GoldenPath hg19 (UCSC)RPSA  -     chr3:39448180-39454032 +  3p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPSA  -     3p22.1   [Description]    (hg38-Dec_2013)
EnsemblRPSA - 3p22.1 [CytoView hg19]  RPSA - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIRPSA [Mapview hg19]  RPSA [Mapview hg38]
OMIM150370   271400   
Gene and transcription
Genbank (Entrez)AF503367 AJ572067 AK055991 BC005391 BC008867
RefSeq transcript (Entrez)NM_001304288 NM_002295
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_033234 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)RPSA
Cluster EST : UnigeneHs.449909 [ NCBI ]
CGAP (NCI)Hs.449909
Alternative Splicing GalleryENSG00000168028
Gene ExpressionRPSA [ NCBI-GEO ]   RPSA [ EBI - ARRAY_EXPRESS ]   RPSA [ SEEK ]   RPSA [ MEM ]
Gene Expression Viewer (FireBrowse)RPSA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3921
GTEX Portal (Tissue expression)RPSA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08865   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08865  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08865
Splice isoforms : SwissVarP08865
PhosPhoSitePlusP08865
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_S2_1 (PS00962)    RIBOSOMAL_S2_2 (PS00963)   
Domains : Interpro (EBI)40S_ribosomal_SA    40S_SA_C    Ribosomal_S2    Ribosomal_S2_CS    Ribosomal_S2_euk    Ribosomal_S2_euk/arc    Ribosomal_S2_flav_dom   
Domain families : Pfam (Sanger)40S_SA_C (PF16122)    Ribosomal_S2 (PF00318)   
Domain families : Pfam (NCBI)pfam16122    pfam00318   
Conserved Domain (NCBI)RPSA
DMDM Disease mutations3921
Blocks (Seattle)RPSA
PDB (SRS)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (PDBSum)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (IMB)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
PDB (RSDB)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
Structural Biology KnowledgeBase3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
SCOP (Structural Classification of Proteins)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
CATH (Classification of proteins structures)3BCH    4UG0    4V6X    5A2Q    5AJ0    5FLX   
SuperfamilyP08865
Human Protein AtlasENSG00000168028
Peptide AtlasP08865
HPRD01038
IPIIPI00553164   IPI00411639   IPI00001302   IPI00413108   IPI00927101   IPI00927337   
Protein Interaction databases
DIP (DOE-UCLA)P08865
IntAct (EBI)P08865
FunCoupENSG00000168028
BioGRIDRPSA
STRING (EMBL)RPSA
ZODIACRPSA
Ontologies - Pathways
QuickGOP08865
Ontology : AmiGOribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  virus receptor activity  structural constituent of ribosome  laminin receptor activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  plasma membrane  rRNA processing  rRNA export from nucleus  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cell adhesion  membrane  viral transcription  cytosolic small ribosomal subunit  90S preribosome  ribosome binding  laminin binding  poly(A) RNA binding  viral entry into host cell  extracellular exosome  
Ontology : EGO-EBIribosomal small subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  virus receptor activity  structural constituent of ribosome  laminin receptor activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  cytosol  plasma membrane  rRNA processing  rRNA export from nucleus  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cell adhesion  membrane  viral transcription  cytosolic small ribosomal subunit  90S preribosome  ribosome binding  laminin binding  poly(A) RNA binding  viral entry into host cell  extracellular exosome  
Pathways : BIOCARTAPrion Pathway [Genes]   
Pathways : KEGGRibosome   
NDEx NetworkRPSA
Atlas of Cancer Signalling NetworkRPSA
Wikipedia pathwaysRPSA
Orthology - Evolution
OrthoDB3921
GeneTree (enSembl)ENSG00000168028
Phylogenetic Trees/Animal Genes : TreeFamRPSA
HOVERGENP08865
HOGENOMP08865
Homologs : HomoloGeneRPSA
Homology/Alignments : Family Browser (UCSC)RPSA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPSA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPSA
dbVarRPSA
ClinVarRPSA
1000_GenomesRPSA 
Exome Variant ServerRPSA
ExAC (Exome Aggregation Consortium)RPSA (select the gene name)
Genetic variants : HAPMAP3921
Genomic Variants (DGV)RPSA [DGVbeta]
DECIPHER (Syndromes)3:39448180-39454032  ENSG00000168028
CONAN: Copy Number AnalysisRPSA 
Mutations
ICGC Data PortalRPSA 
TCGA Data PortalRPSA 
Broad Tumor PortalRPSA
OASIS PortalRPSA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPSA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPSA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPSA
DgiDB (Drug Gene Interaction Database)RPSA
DoCM (Curated mutations)RPSA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPSA (select a term)
intoGenRPSA
Cancer3DRPSA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM150370    271400   
Orphanet14855   
MedgenRPSA
Genetic Testing Registry RPSA
NextProtP08865 [Medical]
TSGene3921
GENETestsRPSA
Huge Navigator RPSA [HugePedia]
snp3D : Map Gene to Disease3921
BioCentury BCIQRPSA
ClinGenRPSA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3921
Chemical/Pharm GKB GenePA30287
Clinical trialRPSA
Miscellaneous
canSAR (ICR)RPSA (select the gene name)
Probes
Litterature
PubMed146 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPSA
EVEXRPSA
GoPubMedRPSA
iHOPRPSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:48 CET 2017

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