Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPSAP52 (ribosomal protein SA pseudogene 52)

Identity

Other aliasRPSA_17_1251
HGNC (Hugo) RPSAP52
LocusID (NCBI) 204010
Atlas_Id 53039
Location 12q14.3  [Link to chromosome band 12q14]
Location_base_pair Starts at 65758021 and ends at 65826974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EBF1 (5q33.3) / RPSAP52 (12q14.3)RAD51B (14q24.1) / RPSAP52 (12q14.3)RPSAP52 (12q14.3) / ALDH2 (12q24.12)
RPSAP52 (12q14.3) / COG5 (7q22.3)RPSAP52 (12q14.3) / EBF1 (5q33.3)RPSAP52 (12q14.3) / ELAC2 (17p12)
RPSAP52 (12q14.3) / WIF1 (12q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPSAP52   35752
Cards
Entrez_Gene (NCBI)RPSAP52  204010  ribosomal protein SA pseudogene 52
AliasesRPSA_17_1251
GeneCards (Weizmann)RPSAP52
Ensembl hg19 (Hinxton)ENSG00000241749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241749 [Gene_View]  chr12:65758021-65826974 [Contig_View]  RPSAP52 [Vega]
ICGC DataPortalENSG00000241749
TCGA cBioPortalRPSAP52
AceView (NCBI)RPSAP52
Genatlas (Paris)RPSAP52
WikiGenes204010
SOURCE (Princeton)RPSAP52
Genetics Home Reference (NIH)RPSAP52
Genomic and cartography
GoldenPath hg38 (UCSC)RPSAP52  -     chr12:65758021-65826974 -  12q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPSAP52  -     12q14.3   [Description]    (hg19-Feb_2009)
EnsemblRPSAP52 - 12q14.3 [CytoView hg19]  RPSAP52 - 12q14.3 [CytoView hg38]
Mapping of homologs : NCBIRPSAP52 [Mapview hg19]  RPSAP52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC058822 BC107865
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPSAP52
Cluster EST : UnigeneHs.558686 [ NCBI ]
CGAP (NCI)Hs.558686
Alternative Splicing GalleryENSG00000241749
Gene ExpressionRPSAP52 [ NCBI-GEO ]   RPSAP52 [ EBI - ARRAY_EXPRESS ]   RPSAP52 [ SEEK ]   RPSAP52 [ MEM ]
Gene Expression Viewer (FireBrowse)RPSAP52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)204010
GTEX Portal (Tissue expression)RPSAP52
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPSAP52
DMDM Disease mutations204010
Blocks (Seattle)RPSAP52
Human Protein AtlasENSG00000241749
Protein Interaction databases
FunCoupENSG00000241749
BioGRIDRPSAP52
STRING (EMBL)RPSAP52
ZODIACRPSAP52
Ontologies - Pathways
Huge Navigator RPSAP52 [HugePedia]
snp3D : Map Gene to Disease204010
BioCentury BCIQRPSAP52
ClinGenRPSAP52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD204010
Clinical trialRPSAP52
Miscellaneous
canSAR (ICR)RPSAP52 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPSAP52
EVEXRPSAP52
GoPubMedRPSAP52
iHOPRPSAP52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:29:35 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.