Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPSAP9 (ribosomal protein SA pseudogene 9)

Identity

Alias_namesLAMR1P9
laminin receptor 1 pseudogene 9
Other aliasRPSA_20_986
HGNC (Hugo) RPSAP9
LocusID (NCBI) 653162
Atlas_Id 72879
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 76398599 and ends at 76400038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPSAP9   31463
Cards
Entrez_Gene (NCBI)RPSAP9  653162  ribosomal protein SA pseudogene 9
AliasesLAMR1P9; RPSA_20_986
GeneCards (Weizmann)RPSAP9
Ensembl hg19 (Hinxton)ENSG00000234618 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234618 [Gene_View]  chr9:76398599-76400038 [Contig_View]  RPSAP9 [Vega]
ICGC DataPortalENSG00000234618
TCGA cBioPortalRPSAP9
AceView (NCBI)RPSAP9
Genatlas (Paris)RPSAP9
WikiGenes653162
SOURCE (Princeton)RPSAP9
Genetics Home Reference (NIH)RPSAP9
Genomic and cartography
GoldenPath hg38 (UCSC)RPSAP9  -     chr9:76398599-76400038 +  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPSAP9  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblRPSAP9 - 9q21.13 [CytoView hg19]  RPSAP9 - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIRPSAP9 [Mapview hg19]  RPSAP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB348177
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPSAP9
Cluster EST : UnigeneHs.655646 [ NCBI ]
CGAP (NCI)Hs.655646
Alternative Splicing GalleryENSG00000234618
Gene ExpressionRPSAP9 [ NCBI-GEO ]   RPSAP9 [ EBI - ARRAY_EXPRESS ]   RPSAP9 [ SEEK ]   RPSAP9 [ MEM ]
Gene Expression Viewer (FireBrowse)RPSAP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)653162
GTEX Portal (Tissue expression)RPSAP9
Human Protein AtlasENSG00000234618-RPSAP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPSAP9
DMDM Disease mutations653162
Blocks (Seattle)RPSAP9
Human Protein Atlas [tissue]ENSG00000234618-RPSAP9 [tissue]
Protein Interaction databases
FunCoupENSG00000234618
BioGRIDRPSAP9
STRING (EMBL)RPSAP9
ZODIACRPSAP9
Ontologies - Pathways
Huge Navigator RPSAP9 [HugePedia]
snp3D : Map Gene to Disease653162
BioCentury BCIQRPSAP9
ClinGenRPSAP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653162
Chemical/Pharm GKB GenePA134884534
Clinical trialRPSAP9
Miscellaneous
canSAR (ICR)RPSAP9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPSAP9
EVEXRPSAP9
GoPubMedRPSAP9
iHOPRPSAP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.