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RPUSD2 (RNA pseudouridylate synthase domain containing 2)

Identity

Alias_namesC15orf19
chromosome 15 open reading frame 19
Alias_symbol (synonym)C18B11
FLJ31409
Other alias
HGNC (Hugo) RPUSD2
LocusID (NCBI) 27079
Atlas_Id 72882
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40569293 and ends at 40574694 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPUSD2   24180
Cards
Entrez_Gene (NCBI)RPUSD2  27079  RNA pseudouridylate synthase domain containing 2
AliasesC15orf19; C18B11
GeneCards (Weizmann)RPUSD2
Ensembl hg19 (Hinxton)ENSG00000166133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166133 [Gene_View]  chr15:40569293-40574694 [Contig_View]  RPUSD2 [Vega]
ICGC DataPortalENSG00000166133
TCGA cBioPortalRPUSD2
AceView (NCBI)RPUSD2
Genatlas (Paris)RPUSD2
WikiGenes27079
SOURCE (Princeton)RPUSD2
Genetics Home Reference (NIH)RPUSD2
Genomic and cartography
GoldenPath hg38 (UCSC)RPUSD2  -     chr15:40569293-40574694 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPUSD2  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblRPUSD2 - 15q15.1 [CytoView hg19]  RPUSD2 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIRPUSD2 [Mapview hg19]  RPUSD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055971 AK293145 AK301383 AK301706 BC007697
RefSeq transcript (Entrez)NM_001286407 NM_152260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPUSD2
Cluster EST : UnigeneHs.173311 [ NCBI ]
CGAP (NCI)Hs.173311
Alternative Splicing GalleryENSG00000166133
Gene ExpressionRPUSD2 [ NCBI-GEO ]   RPUSD2 [ EBI - ARRAY_EXPRESS ]   RPUSD2 [ SEEK ]   RPUSD2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPUSD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27079
GTEX Portal (Tissue expression)RPUSD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ73
Splice isoforms : SwissVarQ8IZ73
PhosPhoSitePlusQ8IZ73
Domaine pattern : Prosite (Expaxy)PSI_RLU (PS01129)   
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_RluC/D    PsdUridine_synth_RluC/D_CS    PsdUridine_synth_RsuA/RluD   
Domain families : Pfam (Sanger)PseudoU_synth_2 (PF00849)   
Domain families : Pfam (NCBI)pfam00849   
Conserved Domain (NCBI)RPUSD2
DMDM Disease mutations27079
Blocks (Seattle)RPUSD2
SuperfamilyQ8IZ73
Human Protein AtlasENSG00000166133
Peptide AtlasQ8IZ73
HPRD12668
IPIIPI00150963   IPI00908891   IPI01011151   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ73
IntAct (EBI)Q8IZ73
FunCoupENSG00000166133
BioGRIDRPUSD2
STRING (EMBL)RPUSD2
ZODIACRPUSD2
Ontologies - Pathways
QuickGOQ8IZ73
Ontology : AmiGOpseudouridine synthesis  RNA binding  cellular_component  biological_process  pseudouridine synthase activity  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  cellular_component  biological_process  pseudouridine synthase activity  
NDEx NetworkRPUSD2
Atlas of Cancer Signalling NetworkRPUSD2
Wikipedia pathwaysRPUSD2
Orthology - Evolution
OrthoDB27079
GeneTree (enSembl)ENSG00000166133
Phylogenetic Trees/Animal Genes : TreeFamRPUSD2
HOVERGENQ8IZ73
HOGENOMQ8IZ73
Homologs : HomoloGeneRPUSD2
Homology/Alignments : Family Browser (UCSC)RPUSD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPUSD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPUSD2
dbVarRPUSD2
ClinVarRPUSD2
1000_GenomesRPUSD2 
Exome Variant ServerRPUSD2
ExAC (Exome Aggregation Consortium)RPUSD2 (select the gene name)
Genetic variants : HAPMAP27079
Genomic Variants (DGV)RPUSD2 [DGVbeta]
DECIPHERRPUSD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPUSD2 
Mutations
ICGC Data PortalRPUSD2 
TCGA Data PortalRPUSD2 
Broad Tumor PortalRPUSD2
OASIS PortalRPUSD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPUSD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPUSD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPUSD2
DgiDB (Drug Gene Interaction Database)RPUSD2
DoCM (Curated mutations)RPUSD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPUSD2 (select a term)
intoGenRPUSD2
Cancer3DRPUSD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPUSD2
Genetic Testing Registry RPUSD2
NextProtQ8IZ73 [Medical]
TSGene27079
GENETestsRPUSD2
Target ValidationRPUSD2
Huge Navigator RPUSD2 [HugePedia]
snp3D : Map Gene to Disease27079
BioCentury BCIQRPUSD2
ClinGenRPUSD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27079
Chemical/Pharm GKB GenePA134866412
Clinical trialRPUSD2
Miscellaneous
canSAR (ICR)RPUSD2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPUSD2
EVEXRPUSD2
GoPubMedRPUSD2
iHOPRPUSD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:33 CEST 2017

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