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RPUSD3 (RNA pseudouridylate synthase domain containing 3)

Identity

Alias_symbol (synonym)MGC29784
Other alias-
HGNC (Hugo) RPUSD3
LocusID (NCBI) 285367
Atlas_Id 72883
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9879533 and ends at 9885702 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPUSD3   28437
Cards
Entrez_Gene (NCBI)RPUSD3  285367  RNA pseudouridylate synthase domain containing 3
Aliases
GeneCards (Weizmann)RPUSD3
Ensembl hg19 (Hinxton)ENSG00000156990 [Gene_View]  chr3:9879533-9885702 [Contig_View]  RPUSD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156990 [Gene_View]  chr3:9879533-9885702 [Contig_View]  RPUSD3 [Vega]
ICGC DataPortalENSG00000156990
TCGA cBioPortalRPUSD3
AceView (NCBI)RPUSD3
Genatlas (Paris)RPUSD3
WikiGenes285367
SOURCE (Princeton)RPUSD3
Genetics Home Reference (NIH)RPUSD3
Genomic and cartography
GoldenPath hg19 (UCSC)RPUSD3  -     chr3:9879533-9885702 -  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPUSD3  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblRPUSD3 - 3p25.3 [CytoView hg19]  RPUSD3 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIRPUSD3 [Mapview hg19]  RPUSD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092026 AK093620 AK094587 AK291888 AK296202
RefSeq transcript (Entrez)NM_001142547 NM_173659
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)RPUSD3
Cluster EST : UnigeneHs.33719 [ NCBI ]
CGAP (NCI)Hs.33719
Alternative Splicing GalleryENSG00000156990
Gene ExpressionRPUSD3 [ NCBI-GEO ]   RPUSD3 [ EBI - ARRAY_EXPRESS ]   RPUSD3 [ SEEK ]   RPUSD3 [ MEM ]
Gene Expression Viewer (FireBrowse)RPUSD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285367
GTEX Portal (Tissue expression)RPUSD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P087   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P087  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P087
Splice isoforms : SwissVarQ6P087
PhosPhoSitePlusQ6P087
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_RsuA/RluD   
Domain families : Pfam (Sanger)PseudoU_synth_2 (PF00849)   
Domain families : Pfam (NCBI)pfam00849   
Conserved Domain (NCBI)RPUSD3
DMDM Disease mutations285367
Blocks (Seattle)RPUSD3
SuperfamilyQ6P087
Human Protein AtlasENSG00000156990
Peptide AtlasQ6P087
HPRD14532
IPIIPI00796048   IPI00916988   IPI01011982   IPI00921546   IPI00926589   IPI00926406   IPI00925267   IPI00925080   IPI00925717   IPI00925479   
Protein Interaction databases
DIP (DOE-UCLA)Q6P087
IntAct (EBI)Q6P087
FunCoupENSG00000156990
BioGRIDRPUSD3
STRING (EMBL)RPUSD3
ZODIACRPUSD3
Ontologies - Pathways
QuickGOQ6P087
Ontology : AmiGOpseudouridine synthesis  protein binding  pseudouridine synthase activity  poly(A) RNA binding  
Ontology : EGO-EBIpseudouridine synthesis  protein binding  pseudouridine synthase activity  poly(A) RNA binding  
NDEx NetworkRPUSD3
Atlas of Cancer Signalling NetworkRPUSD3
Wikipedia pathwaysRPUSD3
Orthology - Evolution
OrthoDB285367
GeneTree (enSembl)ENSG00000156990
Phylogenetic Trees/Animal Genes : TreeFamRPUSD3
HOVERGENQ6P087
HOGENOMQ6P087
Homologs : HomoloGeneRPUSD3
Homology/Alignments : Family Browser (UCSC)RPUSD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPUSD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPUSD3
dbVarRPUSD3
ClinVarRPUSD3
1000_GenomesRPUSD3 
Exome Variant ServerRPUSD3
ExAC (Exome Aggregation Consortium)RPUSD3 (select the gene name)
Genetic variants : HAPMAP285367
Genomic Variants (DGV)RPUSD3 [DGVbeta]
DECIPHER (Syndromes)3:9879533-9885702  ENSG00000156990
CONAN: Copy Number AnalysisRPUSD3 
Mutations
ICGC Data PortalRPUSD3 
TCGA Data PortalRPUSD3 
Broad Tumor PortalRPUSD3
OASIS PortalRPUSD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPUSD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPUSD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPUSD3
DgiDB (Drug Gene Interaction Database)RPUSD3
DoCM (Curated mutations)RPUSD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPUSD3 (select a term)
intoGenRPUSD3
Cancer3DRPUSD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPUSD3
Genetic Testing Registry RPUSD3
NextProtQ6P087 [Medical]
TSGene285367
GENETestsRPUSD3
Huge Navigator RPUSD3 [HugePedia]
snp3D : Map Gene to Disease285367
BioCentury BCIQRPUSD3
ClinGenRPUSD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285367
Chemical/Pharm GKB GenePA134924883
Clinical trialRPUSD3
Miscellaneous
canSAR (ICR)RPUSD3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPUSD3
EVEXRPUSD3
GoPubMedRPUSD3
iHOPRPUSD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:41:59 CET 2017

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