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RPUSD4 (RNA pseudouridylate synthase domain containing 4)

Identity

Alias_symbol (synonym)FLJ14494
Other alias-
HGNC (Hugo) RPUSD4
LocusID (NCBI) 84881
Atlas_Id 72884
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126202094 and ends at 126211692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPUSD4   25898
Cards
Entrez_Gene (NCBI)RPUSD4  84881  RNA pseudouridylate synthase domain containing 4
Aliases
GeneCards (Weizmann)RPUSD4
Ensembl hg19 (Hinxton)ENSG00000165526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165526 [Gene_View]  chr11:126202094-126211692 [Contig_View]  RPUSD4 [Vega]
ICGC DataPortalENSG00000165526
TCGA cBioPortalRPUSD4
AceView (NCBI)RPUSD4
Genatlas (Paris)RPUSD4
WikiGenes84881
SOURCE (Princeton)RPUSD4
Genetics Home Reference (NIH)RPUSD4
Genomic and cartography
GoldenPath hg38 (UCSC)RPUSD4  -     chr11:126202094-126211692 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPUSD4  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblRPUSD4 - 11q24.2 [CytoView hg19]  RPUSD4 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIRPUSD4 [Mapview hg19]  RPUSD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027400 AK225320 AK300723 AK308059 BC014131
RefSeq transcript (Entrez)NM_001144827 NM_032795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPUSD4
Cluster EST : UnigeneHs.150458 [ NCBI ]
CGAP (NCI)Hs.150458
Alternative Splicing GalleryENSG00000165526
Gene ExpressionRPUSD4 [ NCBI-GEO ]   RPUSD4 [ EBI - ARRAY_EXPRESS ]   RPUSD4 [ SEEK ]   RPUSD4 [ MEM ]
Gene Expression Viewer (FireBrowse)RPUSD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84881
GTEX Portal (Tissue expression)RPUSD4
Human Protein AtlasENSG00000165526-RPUSD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CM3
Splice isoforms : SwissVarQ96CM3
PhosPhoSitePlusQ96CM3
Domaine pattern : Prosite (Expaxy)PSI_RLU (PS01129)   
Domains : Interpro (EBI)PsdUridine_synth_cat_dom    PsdUridine_synth_RluC/D_CS    PsdUridine_synth_RsuA/RluD   
Domain families : Pfam (Sanger)PseudoU_synth_2 (PF00849)   
Domain families : Pfam (NCBI)pfam00849   
Conserved Domain (NCBI)RPUSD4
DMDM Disease mutations84881
Blocks (Seattle)RPUSD4
SuperfamilyQ96CM3
Human Protein Atlas [tissue]ENSG00000165526-RPUSD4 [tissue]
Peptide AtlasQ96CM3
HPRD07862
IPIIPI00304069   IPI00921381   IPI00982227   
Protein Interaction databases
DIP (DOE-UCLA)Q96CM3
IntAct (EBI)Q96CM3
FunCoupENSG00000165526
BioGRIDRPUSD4
STRING (EMBL)RPUSD4
ZODIACRPUSD4
Ontologies - Pathways
QuickGOQ96CM3
Ontology : AmiGOpseudouridine synthesis  RNA binding  protein binding  mitochondrion  pseudouridine synthase activity  
Ontology : EGO-EBIpseudouridine synthesis  RNA binding  protein binding  mitochondrion  pseudouridine synthase activity  
NDEx NetworkRPUSD4
Atlas of Cancer Signalling NetworkRPUSD4
Wikipedia pathwaysRPUSD4
Orthology - Evolution
OrthoDB84881
GeneTree (enSembl)ENSG00000165526
Phylogenetic Trees/Animal Genes : TreeFamRPUSD4
HOVERGENQ96CM3
HOGENOMQ96CM3
Homologs : HomoloGeneRPUSD4
Homology/Alignments : Family Browser (UCSC)RPUSD4
Gene fusions - Rearrangements
Tumor Fusion PortalRPUSD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPUSD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPUSD4
dbVarRPUSD4
ClinVarRPUSD4
1000_GenomesRPUSD4 
Exome Variant ServerRPUSD4
ExAC (Exome Aggregation Consortium)ENSG00000165526
GNOMAD BrowserENSG00000165526
Genetic variants : HAPMAP84881
Genomic Variants (DGV)RPUSD4 [DGVbeta]
DECIPHERRPUSD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPUSD4 
Mutations
ICGC Data PortalRPUSD4 
TCGA Data PortalRPUSD4 
Broad Tumor PortalRPUSD4
OASIS PortalRPUSD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPUSD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPUSD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RPUSD4
DgiDB (Drug Gene Interaction Database)RPUSD4
DoCM (Curated mutations)RPUSD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPUSD4 (select a term)
intoGenRPUSD4
Cancer3DRPUSD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPUSD4
MedgenRPUSD4
Genetic Testing Registry RPUSD4
NextProtQ96CM3 [Medical]
TSGene84881
GENETestsRPUSD4
Target ValidationRPUSD4
Huge Navigator RPUSD4 [HugePedia]
snp3D : Map Gene to Disease84881
BioCentury BCIQRPUSD4
ClinGenRPUSD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84881
Chemical/Pharm GKB GenePA134875000
Clinical trialRPUSD4
Miscellaneous
canSAR (ICR)RPUSD4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPUSD4
EVEXRPUSD4
GoPubMedRPUSD4
iHOPRPUSD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:07 CET 2017

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