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RRAGA (Ras-related GTP binding A)

Identity

Alias_namesRas-related GTP binding A
Alias_symbol (synonym)RAGA
FIP-1
Other aliasFIP1
HGNC (Hugo) RRAGA
LocusID (NCBI) 10670
Atlas_Id 72885
Location 9p22.1  [Link to chromosome band 9p22]
Location_base_pair Starts at 19049372 and ends at 19051021 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AUTS2 (7q11.22) / RRAGA (9p22.1)RRAGA (9p22.1) / RRAGA (9p22.1)RRAGA (9p22.1) / SESN2 (1p35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRAGA   16963
Cards
Entrez_Gene (NCBI)RRAGA  10670  Ras-related GTP binding A
AliasesFIP-1; FIP1; RAGA
GeneCards (Weizmann)RRAGA
Ensembl hg19 (Hinxton)ENSG00000155876 [Gene_View]  chr9:19049372-19051021 [Contig_View]  RRAGA [Vega]
Ensembl hg38 (Hinxton)ENSG00000155876 [Gene_View]  chr9:19049372-19051021 [Contig_View]  RRAGA [Vega]
ICGC DataPortalENSG00000155876
TCGA cBioPortalRRAGA
AceView (NCBI)RRAGA
Genatlas (Paris)RRAGA
WikiGenes10670
SOURCE (Princeton)RRAGA
Genetics Home Reference (NIH)RRAGA
Genomic and cartography
GoldenPath hg19 (UCSC)RRAGA  -     chr9:19049372-19051021 +  9p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRAGA  -     9p22.1   [Description]    (hg38-Dec_2013)
EnsemblRRAGA - 9p22.1 [CytoView hg19]  RRAGA - 9p22.1 [CytoView hg38]
Mapping of homologs : NCBIRRAGA [Mapview hg19]  RRAGA [Mapview hg38]
OMIM612194   
Gene and transcription
Genbank (Entrez)AK313023 BC006433 BC009990 BX346838 BX442654
RefSeq transcript (Entrez)NM_006570
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)RRAGA
Cluster EST : UnigeneHs.743260 [ NCBI ]
CGAP (NCI)Hs.743260
Alternative Splicing GalleryENSG00000155876
Gene ExpressionRRAGA [ NCBI-GEO ]   RRAGA [ EBI - ARRAY_EXPRESS ]   RRAGA [ SEEK ]   RRAGA [ MEM ]
Gene Expression Viewer (FireBrowse)RRAGA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10670
GTEX Portal (Tissue expression)RRAGA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L523   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L523  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L523
Splice isoforms : SwissVarQ7L523
PhosPhoSitePlusQ7L523
Domains : Interpro (EBI)Gtr1_RagA    P-loop_NTPase   
Domain families : Pfam (Sanger)Gtr1_RagA (PF04670)   
Domain families : Pfam (NCBI)pfam04670   
Conserved Domain (NCBI)RRAGA
DMDM Disease mutations10670
Blocks (Seattle)RRAGA
SuperfamilyQ7L523
Human Protein AtlasENSG00000155876
Peptide AtlasQ7L523
HPRD10205
IPIIPI00105620   
Protein Interaction databases
DIP (DOE-UCLA)Q7L523
IntAct (EBI)Q7L523
FunCoupENSG00000155876
BioGRIDRRAGA
STRING (EMBL)RRAGA
ZODIACRRAGA
Ontologies - Pathways
QuickGOQ7L523
Ontology : AmiGOGTPase activity  GTPase activity  protein binding  GTP binding  nucleus  cytoplasm  lysosome  lysosomal membrane  Golgi apparatus  apoptotic process  metabolic process  metabolic process  cell death  cellular response to starvation  regulation of autophagy  modulation by virus of host morphology or physiology  positive regulation of TOR signaling  positive regulation of TOR signaling  EGO complex  cellular protein localization  protein homodimerization activity  intracellular membrane-bounded organelle  positive regulation of cytolysis  protein heterodimerization activity  phosphoprotein binding  cellular response to amino acid stimulus  Gtr1-Gtr2 GTPase complex  
Ontology : EGO-EBIGTPase activity  GTPase activity  protein binding  GTP binding  nucleus  cytoplasm  lysosome  lysosomal membrane  Golgi apparatus  apoptotic process  metabolic process  metabolic process  cell death  cellular response to starvation  regulation of autophagy  modulation by virus of host morphology or physiology  positive regulation of TOR signaling  positive regulation of TOR signaling  EGO complex  cellular protein localization  protein homodimerization activity  intracellular membrane-bounded organelle  positive regulation of cytolysis  protein heterodimerization activity  phosphoprotein binding  cellular response to amino acid stimulus  Gtr1-Gtr2 GTPase complex  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkRRAGA
Atlas of Cancer Signalling NetworkRRAGA
Wikipedia pathwaysRRAGA
Orthology - Evolution
OrthoDB10670
GeneTree (enSembl)ENSG00000155876
Phylogenetic Trees/Animal Genes : TreeFamRRAGA
HOVERGENQ7L523
HOGENOMQ7L523
Homologs : HomoloGeneRRAGA
Homology/Alignments : Family Browser (UCSC)RRAGA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRAGA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRAGA
dbVarRRAGA
ClinVarRRAGA
1000_GenomesRRAGA 
Exome Variant ServerRRAGA
ExAC (Exome Aggregation Consortium)RRAGA (select the gene name)
Genetic variants : HAPMAP10670
Genomic Variants (DGV)RRAGA [DGVbeta]
DECIPHER (Syndromes)9:19049372-19051021  ENSG00000155876
CONAN: Copy Number AnalysisRRAGA 
Mutations
ICGC Data PortalRRAGA 
TCGA Data PortalRRAGA 
Broad Tumor PortalRRAGA
OASIS PortalRRAGA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRAGA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRAGA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRAGA
DgiDB (Drug Gene Interaction Database)RRAGA
DoCM (Curated mutations)RRAGA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRAGA (select a term)
intoGenRRAGA
Cancer3DRRAGA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612194   
Orphanet
MedgenRRAGA
Genetic Testing Registry RRAGA
NextProtQ7L523 [Medical]
TSGene10670
GENETestsRRAGA
Huge Navigator RRAGA [HugePedia]
snp3D : Map Gene to Disease10670
BioCentury BCIQRRAGA
ClinGenRRAGA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10670
Chemical/Pharm GKB GenePA134980509
Clinical trialRRAGA
Miscellaneous
canSAR (ICR)RRAGA (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRAGA
EVEXRRAGA
GoPubMedRRAGA
iHOPRRAGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:59 CET 2017

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