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RRAGB (Ras related GTP binding B)

Identity

Alias_namesRas-related GTP binding B
Other aliasRAGB
bA465E19.1
HGNC (Hugo) RRAGB
LocusID (NCBI) 10325
Atlas_Id 52928
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55744110 and ends at 55785207 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAD51B (14q24.1) / RRAGB (Xp11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRAGB   19901
Cards
Entrez_Gene (NCBI)RRAGB  10325  Ras related GTP binding B
AliasesRAGB; bA465E19.1
GeneCards (Weizmann)RRAGB
Ensembl hg19 (Hinxton)ENSG00000083750 [Gene_View]  chrX:55744110-55785207 [Contig_View]  RRAGB [Vega]
Ensembl hg38 (Hinxton)ENSG00000083750 [Gene_View]  chrX:55744110-55785207 [Contig_View]  RRAGB [Vega]
ICGC DataPortalENSG00000083750
TCGA cBioPortalRRAGB
AceView (NCBI)RRAGB
Genatlas (Paris)RRAGB
WikiGenes10325
SOURCE (Princeton)RRAGB
Genetics Home Reference (NIH)RRAGB
Genomic and cartography
GoldenPath hg19 (UCSC)RRAGB  -     chrX:55744110-55785207 +  Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRAGB  -     Xp11.21   [Description]    (hg38-Dec_2013)
EnsemblRRAGB - Xp11.21 [CytoView hg19]  RRAGB - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIRRAGB [Mapview hg19]  RRAGB [Mapview hg38]
OMIM300725   
Gene and transcription
Genbank (Entrez)AK289407 AL831926 BC034726 BX641797 CD676755
RefSeq transcript (Entrez)NM_006064 NM_016656
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011630 NW_004929442
Consensus coding sequences : CCDS (NCBI)RRAGB
Cluster EST : UnigeneHs.50282 [ NCBI ]
CGAP (NCI)Hs.50282
Alternative Splicing GalleryENSG00000083750
Gene ExpressionRRAGB [ NCBI-GEO ]   RRAGB [ EBI - ARRAY_EXPRESS ]   RRAGB [ SEEK ]   RRAGB [ MEM ]
Gene Expression Viewer (FireBrowse)RRAGB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10325
GTEX Portal (Tissue expression)RRAGB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZM2
Splice isoforms : SwissVarQ5VZM2
PhosPhoSitePlusQ5VZM2
Domains : Interpro (EBI)Gtr1_RagA    P-loop_NTPase   
Domain families : Pfam (Sanger)Gtr1_RagA (PF04670)   
Domain families : Pfam (NCBI)pfam04670   
Conserved Domain (NCBI)RRAGB
DMDM Disease mutations10325
Blocks (Seattle)RRAGB
SuperfamilyQ5VZM2
Human Protein AtlasENSG00000083750
Peptide AtlasQ5VZM2
HPRD06710
IPIIPI00010317   IPI00296554   IPI00644889   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZM2
IntAct (EBI)Q5VZM2
FunCoupENSG00000083750
BioGRIDRRAGB
STRING (EMBL)RRAGB
ZODIACRRAGB
Ontologies - Pathways
QuickGOQ5VZM2
Ontology : AmiGOGTPase activity  protein binding  GTP binding  GTP binding  nucleus  cytoplasm  lysosome  lysosomal membrane  Golgi apparatus  cytosol  cell cycle arrest  regulation of autophagy  macroautophagy  regulation of TOR signaling  positive regulation of TOR signaling  guanyl ribonucleotide binding  cellular response to amino acid starvation  EGO complex  cellular protein localization  intracellular membrane-bounded organelle  cellular response to amino acid stimulus  Gtr1-Gtr2 GTPase complex  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  GTP binding  nucleus  cytoplasm  lysosome  lysosomal membrane  Golgi apparatus  cytosol  cell cycle arrest  regulation of autophagy  macroautophagy  regulation of TOR signaling  positive regulation of TOR signaling  guanyl ribonucleotide binding  cellular response to amino acid starvation  EGO complex  cellular protein localization  intracellular membrane-bounded organelle  cellular response to amino acid stimulus  Gtr1-Gtr2 GTPase complex  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkRRAGB
Atlas of Cancer Signalling NetworkRRAGB
Wikipedia pathwaysRRAGB
Orthology - Evolution
OrthoDB10325
GeneTree (enSembl)ENSG00000083750
Phylogenetic Trees/Animal Genes : TreeFamRRAGB
HOVERGENQ5VZM2
HOGENOMQ5VZM2
Homologs : HomoloGeneRRAGB
Homology/Alignments : Family Browser (UCSC)RRAGB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRAGB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRAGB
dbVarRRAGB
ClinVarRRAGB
1000_GenomesRRAGB 
Exome Variant ServerRRAGB
ExAC (Exome Aggregation Consortium)RRAGB (select the gene name)
Genetic variants : HAPMAP10325
Genomic Variants (DGV)RRAGB [DGVbeta]
DECIPHER (Syndromes)X:55744110-55785207  ENSG00000083750
CONAN: Copy Number AnalysisRRAGB 
Mutations
ICGC Data PortalRRAGB 
TCGA Data PortalRRAGB 
Broad Tumor PortalRRAGB
OASIS PortalRRAGB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRAGB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRAGB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRAGB
DgiDB (Drug Gene Interaction Database)RRAGB
DoCM (Curated mutations)RRAGB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRAGB (select a term)
intoGenRRAGB
Cancer3DRRAGB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300725   
Orphanet
MedgenRRAGB
Genetic Testing Registry RRAGB
NextProtQ5VZM2 [Medical]
TSGene10325
GENETestsRRAGB
Huge Navigator RRAGB [HugePedia]
snp3D : Map Gene to Disease10325
BioCentury BCIQRRAGB
ClinGenRRAGB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10325
Chemical/Pharm GKB GenePA134902397
Clinical trialRRAGB
Miscellaneous
canSAR (ICR)RRAGB (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRAGB
EVEXRRAGB
GoPubMedRRAGB
iHOPRRAGB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:04 CEST 2017

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