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RRAGC (Ras related GTP binding C)

Identity

Alias_namesRas-related GTP binding C
Alias_symbol (synonym)GTR2
FLJ13311
Other aliasRAGC
TIB929
HGNC (Hugo) RRAGC
LocusID (NCBI) 64121
Atlas_Id 72886
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38838197 and ends at 38859823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IER5L (9q34.11) / RRAGC (1p34.3)SZT2 (1p34.2) / RRAGC (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRAGC   19902
Cards
Entrez_Gene (NCBI)RRAGC  64121  Ras related GTP binding C
AliasesGTR2; RAGC; TIB929
GeneCards (Weizmann)RRAGC
Ensembl hg19 (Hinxton)ENSG00000116954 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116954 [Gene_View]  chr1:38838197-38859823 [Contig_View]  RRAGC [Vega]
ICGC DataPortalENSG00000116954
TCGA cBioPortalRRAGC
AceView (NCBI)RRAGC
Genatlas (Paris)RRAGC
WikiGenes64121
SOURCE (Princeton)RRAGC
Genetics Home Reference (NIH)RRAGC
Genomic and cartography
GoldenPath hg38 (UCSC)RRAGC  -     chr1:38838197-38859823 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRAGC  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblRRAGC - 1p34.3 [CytoView hg19]  RRAGC - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIRRAGC [Mapview hg19]  RRAGC [Mapview hg38]
OMIM608267   
Gene and transcription
Genbank (Entrez)AF131773 AF272035 AF323609 AK023373 AK092808
RefSeq transcript (Entrez)NM_001271851 NM_022157
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRAGC
Cluster EST : UnigeneHs.532461 [ NCBI ]
CGAP (NCI)Hs.532461
Alternative Splicing GalleryENSG00000116954
Gene ExpressionRRAGC [ NCBI-GEO ]   RRAGC [ EBI - ARRAY_EXPRESS ]   RRAGC [ SEEK ]   RRAGC [ MEM ]
Gene Expression Viewer (FireBrowse)RRAGC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64121
GTEX Portal (Tissue expression)RRAGC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB90
Splice isoforms : SwissVarQ9HB90
PhosPhoSitePlusQ9HB90
Domains : Interpro (EBI)Gtr1_RagA    P-loop_NTPase   
Domain families : Pfam (Sanger)Gtr1_RagA (PF04670)   
Domain families : Pfam (NCBI)pfam04670   
Conserved Domain (NCBI)RRAGC
DMDM Disease mutations64121
Blocks (Seattle)RRAGC
PDB (SRS)3LLU   
PDB (PDBSum)3LLU   
PDB (IMB)3LLU   
PDB (RSDB)3LLU   
Structural Biology KnowledgeBase3LLU   
SCOP (Structural Classification of Proteins)3LLU   
CATH (Classification of proteins structures)3LLU   
SuperfamilyQ9HB90
Human Protein AtlasENSG00000116954
Peptide AtlasQ9HB90
HPRD12198
IPIIPI00300585   IPI00910376   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB90
IntAct (EBI)Q9HB90
FunCoupENSG00000116954
BioGRIDRRAGC
STRING (EMBL)RRAGC
ZODIACRRAGC
Ontologies - Pathways
QuickGOQ9HB90
Ontology : AmiGOmagnesium ion binding  GTPase activity  protein binding  GTP binding  GTP binding  nucleus  cytoplasm  lysosome  cytosol  transcription, DNA-templated  apoptotic process  cell cycle arrest  small GTPase mediated signal transduction  RNA splicing  cell growth  macroautophagy  GDP binding  GDP binding  regulation of TOR signaling  cellular response to amino acid starvation  cellular protein localization  response to amino acid  intracellular membrane-bounded organelle  protein heterodimerization activity  protein heterodimerization activity  GTPase binding  cellular response to amino acid stimulus  regulation of TORC1 signaling  
Ontology : EGO-EBImagnesium ion binding  GTPase activity  protein binding  GTP binding  GTP binding  nucleus  cytoplasm  lysosome  cytosol  transcription, DNA-templated  apoptotic process  cell cycle arrest  small GTPase mediated signal transduction  RNA splicing  cell growth  macroautophagy  GDP binding  GDP binding  regulation of TOR signaling  cellular response to amino acid starvation  cellular protein localization  response to amino acid  intracellular membrane-bounded organelle  protein heterodimerization activity  protein heterodimerization activity  GTPase binding  cellular response to amino acid stimulus  regulation of TORC1 signaling  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkRRAGC
Atlas of Cancer Signalling NetworkRRAGC
Wikipedia pathwaysRRAGC
Orthology - Evolution
OrthoDB64121
GeneTree (enSembl)ENSG00000116954
Phylogenetic Trees/Animal Genes : TreeFamRRAGC
HOVERGENQ9HB90
HOGENOMQ9HB90
Homologs : HomoloGeneRRAGC
Homology/Alignments : Family Browser (UCSC)RRAGC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRAGC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRAGC
dbVarRRAGC
ClinVarRRAGC
1000_GenomesRRAGC 
Exome Variant ServerRRAGC
ExAC (Exome Aggregation Consortium)RRAGC (select the gene name)
Genetic variants : HAPMAP64121
Genomic Variants (DGV)RRAGC [DGVbeta]
DECIPHERRRAGC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRAGC 
Mutations
ICGC Data PortalRRAGC 
TCGA Data PortalRRAGC 
Broad Tumor PortalRRAGC
OASIS PortalRRAGC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRAGC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRAGC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRAGC
DgiDB (Drug Gene Interaction Database)RRAGC
DoCM (Curated mutations)RRAGC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRAGC (select a term)
intoGenRRAGC
Cancer3DRRAGC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608267   
Orphanet
MedgenRRAGC
Genetic Testing Registry RRAGC
NextProtQ9HB90 [Medical]
TSGene64121
GENETestsRRAGC
Target ValidationRRAGC
Huge Navigator RRAGC [HugePedia]
snp3D : Map Gene to Disease64121
BioCentury BCIQRRAGC
ClinGenRRAGC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64121
Chemical/Pharm GKB GenePA134862062
Clinical trialRRAGC
Miscellaneous
canSAR (ICR)RRAGC (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRAGC
EVEXRRAGC
GoPubMedRRAGC
iHOPRRAGC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:56 CEST 2017

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