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RRAGD (Ras related GTP binding D)

Identity

Alias_namesRas-related GTP binding D
Alias_symbol (synonym)DKFZP761H171
bA11D8.2.1
Other aliasRAGD
HGNC (Hugo) RRAGD
LocusID (NCBI) 58528
Atlas_Id 43484
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 89364616 and ends at 89412276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SOAT1 (1q25.2) / RRAGD (6q15)UBE2J1 (6q15) / RRAGD (6q15)UBE2J1 6q15 / RRAGD 6q15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRAGD   19903
Cards
Entrez_Gene (NCBI)RRAGD  58528  Ras related GTP binding D
AliasesRAGD; bA11D8.2.1
GeneCards (Weizmann)RRAGD
Ensembl hg19 (Hinxton)ENSG00000025039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000025039 [Gene_View]  ENSG00000025039 [Sequence]  chr6:89364616-89412276 [Contig_View]  RRAGD [Vega]
ICGC DataPortalENSG00000025039
TCGA cBioPortalRRAGD
AceView (NCBI)RRAGD
Genatlas (Paris)RRAGD
WikiGenes58528
SOURCE (Princeton)RRAGD
Genetics Home Reference (NIH)RRAGD
Genomic and cartography
GoldenPath hg38 (UCSC)RRAGD  -     chr6:89364616-89412276 -  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRAGD  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblRRAGD - 6q15 [CytoView hg19]  RRAGD - 6q15 [CytoView hg38]
Mapping of homologs : NCBIRRAGD [Mapview hg19]  RRAGD [Mapview hg38]
OMIM608268   
Gene and transcription
Genbank (Entrez)AF272036 AJ420486 AK126164 AK289799 AL137502
RefSeq transcript (Entrez)NM_021244
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRAGD
Cluster EST : UnigeneHs.31712 [ NCBI ]
CGAP (NCI)Hs.31712
Alternative Splicing GalleryENSG00000025039
Gene ExpressionRRAGD [ NCBI-GEO ]   RRAGD [ EBI - ARRAY_EXPRESS ]   RRAGD [ SEEK ]   RRAGD [ MEM ]
Gene Expression Viewer (FireBrowse)RRAGD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58528
GTEX Portal (Tissue expression)RRAGD
Human Protein AtlasENSG00000025039-RRAGD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQL2
Splice isoforms : SwissVarQ9NQL2
PhosPhoSitePlusQ9NQL2
Domains : Interpro (EBI)Gtr1_RagA    P-loop_NTPase   
Domain families : Pfam (Sanger)Gtr1_RagA (PF04670)   
Domain families : Pfam (NCBI)pfam04670   
Conserved Domain (NCBI)RRAGD
DMDM Disease mutations58528
Blocks (Seattle)RRAGD
PDB (SRS)2Q3F   
PDB (PDBSum)2Q3F   
PDB (IMB)2Q3F   
PDB (RSDB)2Q3F   
Structural Biology KnowledgeBase2Q3F   
SCOP (Structural Classification of Proteins)2Q3F   
CATH (Classification of proteins structures)2Q3F   
SuperfamilyQ9NQL2
Human Protein Atlas [tissue]ENSG00000025039-RRAGD [tissue]
Peptide AtlasQ9NQL2
HPRD12199
IPIIPI00009737   IPI00478668   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQL2
IntAct (EBI)Q9NQL2
FunCoupENSG00000025039
BioGRIDRRAGD
STRING (EMBL)RRAGD
ZODIACRRAGD
Ontologies - Pathways
QuickGOQ9NQL2
Ontology : AmiGOGTPase activity  GTPase activity  protein binding  GTP binding  nucleus  nucleus  nucleoplasm  cytoplasm  lysosome  lysosome  centrosome  cytosol  cell cycle arrest  cellular response to starvation  regulation of autophagy  regulation of macroautophagy  GDP binding  positive regulation of TOR signaling  positive regulation of TOR signaling  EGO complex  cellular protein localization  protein heterodimerization activity  protein heterodimerization activity  GTPase binding  cellular response to amino acid stimulus  cellular response to amino acid stimulus  cellular response to leucine  positive regulation of TORC1 signaling  Gtr1-Gtr2 GTPase complex  cellular response to leucine starvation  
Ontology : EGO-EBIGTPase activity  GTPase activity  protein binding  GTP binding  nucleus  nucleus  nucleoplasm  cytoplasm  lysosome  lysosome  centrosome  cytosol  cell cycle arrest  cellular response to starvation  regulation of autophagy  regulation of macroautophagy  GDP binding  positive regulation of TOR signaling  positive regulation of TOR signaling  EGO complex  cellular protein localization  protein heterodimerization activity  protein heterodimerization activity  GTPase binding  cellular response to amino acid stimulus  cellular response to amino acid stimulus  cellular response to leucine  positive regulation of TORC1 signaling  Gtr1-Gtr2 GTPase complex  cellular response to leucine starvation  
Pathways : KEGGmTOR signaling pathway   
NDEx NetworkRRAGD
Atlas of Cancer Signalling NetworkRRAGD
Wikipedia pathwaysRRAGD
Orthology - Evolution
OrthoDB58528
GeneTree (enSembl)ENSG00000025039
Phylogenetic Trees/Animal Genes : TreeFamRRAGD
HOVERGENQ9NQL2
HOGENOMQ9NQL2
Homologs : HomoloGeneRRAGD
Homology/Alignments : Family Browser (UCSC)RRAGD
Gene fusions - Rearrangements
Fusion PortalUBE2J1 6q15 RRAGD 6q15 BRCA
Fusion : QuiverRRAGD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRAGD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRAGD
dbVarRRAGD
ClinVarRRAGD
1000_GenomesRRAGD 
Exome Variant ServerRRAGD
ExAC (Exome Aggregation Consortium)ENSG00000025039
GNOMAD BrowserENSG00000025039
Varsome BrowserRRAGD
Genetic variants : HAPMAP58528
Genomic Variants (DGV)RRAGD [DGVbeta]
DECIPHERRRAGD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRAGD 
Mutations
ICGC Data PortalRRAGD 
TCGA Data PortalRRAGD 
Broad Tumor PortalRRAGD
OASIS PortalRRAGD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRAGD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRAGD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRAGD
DgiDB (Drug Gene Interaction Database)RRAGD
DoCM (Curated mutations)RRAGD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRAGD (select a term)
intoGenRRAGD
Cancer3DRRAGD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608268   
Orphanet
DisGeNETRRAGD
MedgenRRAGD
Genetic Testing Registry RRAGD
NextProtQ9NQL2 [Medical]
TSGene58528
GENETestsRRAGD
Target ValidationRRAGD
Huge Navigator RRAGD [HugePedia]
snp3D : Map Gene to Disease58528
BioCentury BCIQRRAGD
ClinGenRRAGD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58528
Chemical/Pharm GKB GenePA134957148
Clinical trialRRAGD
Miscellaneous
canSAR (ICR)RRAGD (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRAGD
EVEXRRAGD
GoPubMedRRAGD
iHOPRRAGD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:36:42 CET 2018

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