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RRBP1 (ribosome binding protein 1)

Identity

Alias_namesribosome binding protein 1 (dog 180kD homolog)
ribosome binding protein 1 homolog 180kDa (dog)
Alias_symbol (synonym)ES/130
hES
Other aliasES130
RRp
HGNC (Hugo) RRBP1
LocusID (NCBI) 6238
Atlas_Id 51043
Location 20p12.1  [Link to chromosome band 20p12]
Location_base_pair Starts at 17613678 and ends at 17682283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSH1 (17q23.3) / RRBP1 (20p12.1)KIF16B (20p12.1) / RRBP1 (20p12.1)MIR29B2 (1q32.2) / RRBP1 (20p12.1)
RAB11B (19p13.2) / RRBP1 (20p12.1)RRBP1 (20p12.1) / CHID1 (11p15.5)RRBP1 (20p12.1) / RRBP1 (20p12.1)
RRBP1 (20p12.1) / RUFY1 (5q35.3)RRBP1 (20p12.1) / TASP1 (20p12.1)RRJPq (20p12.1) / UBXN4 (2q21.3)
KIF16B 20p12.1 / RRBP1 20p12.1RRBP1 20p12.1 / CHID1 11p15.5RRBP1 20p12.1 / TASP1 20p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRBP1   10448
Cards
Entrez_Gene (NCBI)RRBP1  6238  ribosome binding protein 1
AliasesES/130; ES130; RRp; hES
GeneCards (Weizmann)RRBP1
Ensembl hg19 (Hinxton)ENSG00000125844 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125844 [Gene_View]  chr20:17613678-17682283 [Contig_View]  RRBP1 [Vega]
ICGC DataPortalENSG00000125844
TCGA cBioPortalRRBP1
AceView (NCBI)RRBP1
Genatlas (Paris)RRBP1
WikiGenes6238
SOURCE (Princeton)RRBP1
Genetics Home Reference (NIH)RRBP1
Genomic and cartography
GoldenPath hg38 (UCSC)RRBP1  -     chr20:17613678-17682283 -  20p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRBP1  -     20p12.1   [Description]    (hg19-Feb_2009)
EnsemblRRBP1 - 20p12.1 [CytoView hg19]  RRBP1 - 20p12.1 [CytoView hg38]
Mapping of homologs : NCBIRRBP1 [Mapview hg19]  RRBP1 [Mapview hg38]
OMIM601418   
Gene and transcription
Genbank (Entrez)AB037819 AB287347 AF006751 AF007575 AK093465
RefSeq transcript (Entrez)NM_001042576 NM_004587
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRBP1
Cluster EST : UnigeneHs.472213 [ NCBI ]
CGAP (NCI)Hs.472213
Alternative Splicing GalleryENSG00000125844
Gene ExpressionRRBP1 [ NCBI-GEO ]   RRBP1 [ EBI - ARRAY_EXPRESS ]   RRBP1 [ SEEK ]   RRBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6238
GTEX Portal (Tissue expression)RRBP1
Human Protein AtlasENSG00000125844-RRBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2E9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2E9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2E9
Splice isoforms : SwissVarQ9P2E9
PhosPhoSitePlusQ9P2E9
Domains : Interpro (EBI)Rib_rcpt_KP   
Domain families : Pfam (Sanger)Rib_recp_KP_reg (PF05104)   
Domain families : Pfam (NCBI)pfam05104   
Conserved Domain (NCBI)RRBP1
DMDM Disease mutations6238
Blocks (Seattle)RRBP1
SuperfamilyQ9P2E9
Human Protein Atlas [tissue]ENSG00000125844-RRBP1 [tissue]
Peptide AtlasQ9P2E9
HPRD11796
IPIIPI00215743   IPI00220967   IPI00744135   IPI01011993   IPI01015934   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2E9
IntAct (EBI)Q9P2E9
FunCoupENSG00000125844
BioGRIDRRBP1
STRING (EMBL)RRBP1
ZODIACRRBP1
Ontologies - Pathways
QuickGOQ9P2E9
Ontology : AmiGOosteoblast differentiation  RNA binding  receptor activity  endoplasmic reticulum  ribosome  translation  protein transport  membrane  integral component of endoplasmic reticulum membrane  
Ontology : EGO-EBIosteoblast differentiation  RNA binding  receptor activity  endoplasmic reticulum  ribosome  translation  protein transport  membrane  integral component of endoplasmic reticulum membrane  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkRRBP1
Atlas of Cancer Signalling NetworkRRBP1
Wikipedia pathwaysRRBP1
Orthology - Evolution
OrthoDB6238
GeneTree (enSembl)ENSG00000125844
Phylogenetic Trees/Animal Genes : TreeFamRRBP1
HOVERGENQ9P2E9
HOGENOMQ9P2E9
Homologs : HomoloGeneRRBP1
Homology/Alignments : Family Browser (UCSC)RRBP1
Gene fusions - Rearrangements
Fusion : MitelmanKIF16B/RRBP1 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion : MitelmanRRBP1/CHID1 [20p12.1/11p15.5]  [t(11;20)(p15;p12)]  
Fusion : MitelmanRRBP1/TASP1 [20p12.1/20p12.1]  [t(20;20)(p12;p12)]  
Fusion: TCGA_MDACCKIF16B 20p12.1 RRBP1 20p12.1 LUAD
Fusion: TCGA_MDACCRRBP1 20p12.1 CHID1 11p15.5 LUAD
Fusion: TCGA_MDACCRRBP1 20p12.1 TASP1 20p12.1 LUAD
Tumor Fusion PortalRRBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRBP1
dbVarRRBP1
ClinVarRRBP1
1000_GenomesRRBP1 
Exome Variant ServerRRBP1
ExAC (Exome Aggregation Consortium)ENSG00000125844
GNOMAD BrowserENSG00000125844
Genetic variants : HAPMAP6238
Genomic Variants (DGV)RRBP1 [DGVbeta]
DECIPHERRRBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRBP1 
Mutations
ICGC Data PortalRRBP1 
TCGA Data PortalRRBP1 
Broad Tumor PortalRRBP1
OASIS PortalRRBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRBP1
DgiDB (Drug Gene Interaction Database)RRBP1
DoCM (Curated mutations)RRBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRBP1 (select a term)
intoGenRRBP1
Cancer3DRRBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601418   
Orphanet
DisGeNETRRBP1
MedgenRRBP1
Genetic Testing Registry RRBP1
NextProtQ9P2E9 [Medical]
TSGene6238
GENETestsRRBP1
Target ValidationRRBP1
Huge Navigator RRBP1 [HugePedia]
snp3D : Map Gene to Disease6238
BioCentury BCIQRRBP1
ClinGenRRBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6238
Chemical/Pharm GKB GenePA34863
Clinical trialRRBP1
Miscellaneous
canSAR (ICR)RRBP1 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRBP1
EVEXRRBP1
GoPubMedRRBP1
iHOPRRBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:57:04 CET 2017

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