Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RRH (retinal pigment epithelium-derived rhodopsin homolog)

Identity

Alias_symbol (synonym)peropsin
Other alias-
HGNC (Hugo) RRH
LocusID (NCBI) 10692
Atlas_Id 72887
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 110749150 and ends at 110765861 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRH   10450
Cards
Entrez_Gene (NCBI)RRH  10692  retinal pigment epithelium-derived rhodopsin homolog
Aliases
GeneCards (Weizmann)RRH
Ensembl hg19 (Hinxton)ENSG00000180245 [Gene_View]  chr4:110749150-110765861 [Contig_View]  RRH [Vega]
Ensembl hg38 (Hinxton)ENSG00000180245 [Gene_View]  chr4:110749150-110765861 [Contig_View]  RRH [Vega]
ICGC DataPortalENSG00000180245
TCGA cBioPortalRRH
AceView (NCBI)RRH
Genatlas (Paris)RRH
WikiGenes10692
SOURCE (Princeton)RRH
Genetics Home Reference (NIH)RRH
Genomic and cartography
GoldenPath hg19 (UCSC)RRH  -     chr4:110749150-110765861 +  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRH  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblRRH - 4q25 [CytoView hg19]  RRH - 4q25 [CytoView hg38]
Mapping of homologs : NCBIRRH [Mapview hg19]  RRH [Mapview hg38]
OMIM605224   
Gene and transcription
Genbank (Entrez)AF012270 BC128120 BC128121 BC128401 BG189259
RefSeq transcript (Entrez)NM_006583
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)RRH
Cluster EST : UnigeneHs.658310 [ NCBI ]
CGAP (NCI)Hs.658310
Alternative Splicing GalleryENSG00000180245
Gene ExpressionRRH [ NCBI-GEO ]   RRH [ EBI - ARRAY_EXPRESS ]   RRH [ SEEK ]   RRH [ MEM ]
Gene Expression Viewer (FireBrowse)RRH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10692
GTEX Portal (Tissue expression)RRH
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14718   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14718  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14718
Splice isoforms : SwissVarO14718
PhosPhoSitePlusO14718
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Peropsin    Retinal_BS   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)RRH
DMDM Disease mutations10692
Blocks (Seattle)RRH
SuperfamilyO14718
Human Protein AtlasENSG00000180245
Peptide AtlasO14718
HPRD05565
IPIIPI00023623   
Protein Interaction databases
DIP (DOE-UCLA)O14718
IntAct (EBI)O14718
FunCoupENSG00000180245
BioGRIDRRH
STRING (EMBL)RRH
ZODIACRRH
Ontologies - Pathways
QuickGOO14718
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  
NDEx NetworkRRH
Atlas of Cancer Signalling NetworkRRH
Wikipedia pathwaysRRH
Orthology - Evolution
OrthoDB10692
GeneTree (enSembl)ENSG00000180245
Phylogenetic Trees/Animal Genes : TreeFamRRH
HOVERGENO14718
HOGENOMO14718
Homologs : HomoloGeneRRH
Homology/Alignments : Family Browser (UCSC)RRH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRH
dbVarRRH
ClinVarRRH
1000_GenomesRRH 
Exome Variant ServerRRH
ExAC (Exome Aggregation Consortium)RRH (select the gene name)
Genetic variants : HAPMAP10692
Genomic Variants (DGV)RRH [DGVbeta]
DECIPHER (Syndromes)4:110749150-110765861  ENSG00000180245
CONAN: Copy Number AnalysisRRH 
Mutations
ICGC Data PortalRRH 
TCGA Data PortalRRH 
Broad Tumor PortalRRH
OASIS PortalRRH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRRH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRRH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRH
DgiDB (Drug Gene Interaction Database)RRH
DoCM (Curated mutations)RRH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRH (select a term)
intoGenRRH
Cancer3DRRH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605224   
Orphanet
MedgenRRH
Genetic Testing Registry RRH
NextProtO14718 [Medical]
TSGene10692
GENETestsRRH
Huge Navigator RRH [HugePedia]
snp3D : Map Gene to Disease10692
BioCentury BCIQRRH
ClinGenRRH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10692
Chemical/Pharm GKB GenePA34865
Clinical trialRRH
Miscellaneous
canSAR (ICR)RRH (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRH
EVEXRRH
GoPubMedRRH
iHOPRRH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.