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RRN3P1 (RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1)

Identity

Alias_namesRNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1
Other alias-
HGNC (Hugo) RRN3P1
LocusID (NCBI) 730092
Atlas_Id 72888
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21807951 and ends at 21830495 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRN3P1   30548
Cards
Entrez_Gene (NCBI)RRN3P1  730092  RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1
Aliases
GeneCards (Weizmann)RRN3P1
Ensembl hg19 (Hinxton) [Gene_View]  chr16:21807951-21830495 [Contig_View]  RRN3P1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21807951-21830495 [Contig_View]  RRN3P1 [Vega]
TCGA cBioPortalRRN3P1
AceView (NCBI)RRN3P1
Genatlas (Paris)RRN3P1
WikiGenes730092
SOURCE (Princeton)RRN3P1
Genetics Home Reference (NIH)RRN3P1
Genomic and cartography
GoldenPath hg19 (UCSC)RRN3P1  -     chr16:21807951-21830495 -  16p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RRN3P1  -     16p12.2   [Description]    (hg38-Dec_2013)
EnsemblRRN3P1 - 16p12.2 [CytoView hg19]  RRN3P1 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIRRN3P1 [Mapview hg19]  RRN3P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF054994 AK126166 AK291749 AK309501 AL702574
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)RRN3P1
Cluster EST : UnigeneHs.348979 [ NCBI ]
CGAP (NCI)Hs.348979
Gene ExpressionRRN3P1 [ NCBI-GEO ]   RRN3P1 [ EBI - ARRAY_EXPRESS ]   RRN3P1 [ SEEK ]   RRN3P1 [ MEM ]
Gene Expression Viewer (FireBrowse)RRN3P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730092
GTEX Portal (Tissue expression)RRN3P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M238   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M238  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M238
Splice isoforms : SwissVarQ2M238
PhosPhoSitePlusQ2M238
Domains : Interpro (EBI)RNA_pol_I_trans_ini_fac_RRN3   
Domain families : Pfam (Sanger)RRN3 (PF05327)   
Domain families : Pfam (NCBI)pfam05327   
Conserved Domain (NCBI)RRN3P1
DMDM Disease mutations730092
Blocks (Seattle)RRN3P1
SuperfamilyQ2M238
Peptide AtlasQ2M238
HPRD14301
IPIIPI00094654   
Protein Interaction databases
DIP (DOE-UCLA)Q2M238
IntAct (EBI)Q2M238
BioGRIDRRN3P1
STRING (EMBL)RRN3P1
ZODIACRRN3P1
Ontologies - Pathways
QuickGOQ2M238
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRRN3P1
Atlas of Cancer Signalling NetworkRRN3P1
Wikipedia pathwaysRRN3P1
Orthology - Evolution
OrthoDB730092
Phylogenetic Trees/Animal Genes : TreeFamRRN3P1
HOVERGENQ2M238
HOGENOMQ2M238
Homologs : HomoloGeneRRN3P1
Homology/Alignments : Family Browser (UCSC)RRN3P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRN3P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRN3P1
dbVarRRN3P1
ClinVarRRN3P1
1000_GenomesRRN3P1 
Exome Variant ServerRRN3P1
ExAC (Exome Aggregation Consortium)RRN3P1 (select the gene name)
Genetic variants : HAPMAP730092
Genomic Variants (DGV)RRN3P1 [DGVbeta]
DECIPHER (Syndromes)16:21807951-21830495  
CONAN: Copy Number AnalysisRRN3P1 
Mutations
ICGC Data PortalRRN3P1 
TCGA Data PortalRRN3P1 
Broad Tumor PortalRRN3P1
OASIS PortalRRN3P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRRN3P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRN3P1
DgiDB (Drug Gene Interaction Database)RRN3P1
DoCM (Curated mutations)RRN3P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRN3P1 (select a term)
intoGenRRN3P1
Cancer3DRRN3P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRN3P1
Genetic Testing Registry RRN3P1
NextProtQ2M238 [Medical]
TSGene730092
GENETestsRRN3P1
Huge Navigator RRN3P1 [HugePedia]
snp3D : Map Gene to Disease730092
BioCentury BCIQRRN3P1
ClinGenRRN3P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730092
Clinical trialRRN3P1
Miscellaneous
canSAR (ICR)RRN3P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRN3P1
EVEXRRN3P1
GoPubMedRRN3P1
iHOPRRN3P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:00 CET 2017

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