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RRN3P2 (RRN3 homolog, RNA polymerase I transcription factor pseudogene 2)

Identity

Alias_namesRNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2
Other alias-
HGNC (Hugo) RRN3P2
LocusID (NCBI) 653390
Atlas_Id 72889
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29074842 and ends at 29116717 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RRN3P2   37619
Cards
Entrez_Gene (NCBI)RRN3P2  653390  RRN3 homolog, RNA polymerase I transcription factor pseudogene 2
Aliases
GeneCards (Weizmann)RRN3P2
Ensembl hg19 (Hinxton)ENSG00000103472 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103472 [Gene_View]  chr16:29074842-29116717 [Contig_View]  RRN3P2 [Vega]
ICGC DataPortalENSG00000103472
TCGA cBioPortalRRN3P2
AceView (NCBI)RRN3P2
Genatlas (Paris)RRN3P2
WikiGenes653390
SOURCE (Princeton)RRN3P2
Genetics Home Reference (NIH)RRN3P2
Genomic and cartography
GoldenPath hg38 (UCSC)RRN3P2  -     chr16:29074842-29116717 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RRN3P2  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblRRN3P2 - 16p11.2 [CytoView hg19]  RRN3P2 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIRRN3P2 [Mapview hg19]  RRN3P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK225670 AK298442 AK301253 DC420905
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RRN3P2
Cluster EST : UnigeneHs.720348 [ NCBI ]
CGAP (NCI)Hs.720348
Alternative Splicing GalleryENSG00000103472
Gene ExpressionRRN3P2 [ NCBI-GEO ]   RRN3P2 [ EBI - ARRAY_EXPRESS ]   RRN3P2 [ SEEK ]   RRN3P2 [ MEM ]
Gene Expression Viewer (FireBrowse)RRN3P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653390
GTEX Portal (Tissue expression)RRN3P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIE6
Splice isoforms : SwissVarA6NIE6
PhosPhoSitePlusA6NIE6
Domains : Interpro (EBI)RNA_pol_I_trans_ini_fac_RRN3   
Domain families : Pfam (Sanger)RRN3 (PF05327)   
Domain families : Pfam (NCBI)pfam05327   
Conserved Domain (NCBI)RRN3P2
DMDM Disease mutations653390
Blocks (Seattle)RRN3P2
SuperfamilyA6NIE6
Human Protein AtlasENSG00000103472
Peptide AtlasA6NIE6
Protein Interaction databases
DIP (DOE-UCLA)A6NIE6
IntAct (EBI)A6NIE6
FunCoupENSG00000103472
BioGRIDRRN3P2
STRING (EMBL)RRN3P2
ZODIACRRN3P2
Ontologies - Pathways
QuickGOA6NIE6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRRN3P2
Atlas of Cancer Signalling NetworkRRN3P2
Wikipedia pathwaysRRN3P2
Orthology - Evolution
OrthoDB653390
GeneTree (enSembl)ENSG00000103472
Phylogenetic Trees/Animal Genes : TreeFamRRN3P2
HOVERGENA6NIE6
HOGENOMA6NIE6
Homologs : HomoloGeneRRN3P2
Homology/Alignments : Family Browser (UCSC)RRN3P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRRN3P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RRN3P2
dbVarRRN3P2
ClinVarRRN3P2
1000_GenomesRRN3P2 
Exome Variant ServerRRN3P2
ExAC (Exome Aggregation Consortium)RRN3P2 (select the gene name)
Genetic variants : HAPMAP653390
Genomic Variants (DGV)RRN3P2 [DGVbeta]
DECIPHERRRN3P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRRN3P2 
Mutations
ICGC Data PortalRRN3P2 
TCGA Data PortalRRN3P2 
Broad Tumor PortalRRN3P2
OASIS PortalRRN3P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRRN3P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RRN3P2
DgiDB (Drug Gene Interaction Database)RRN3P2
DoCM (Curated mutations)RRN3P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RRN3P2 (select a term)
intoGenRRN3P2
Cancer3DRRN3P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRRN3P2
Genetic Testing Registry RRN3P2
NextProtA6NIE6 [Medical]
TSGene653390
GENETestsRRN3P2
Target ValidationRRN3P2
Huge Navigator RRN3P2 [HugePedia]
snp3D : Map Gene to Disease653390
BioCentury BCIQRRN3P2
ClinGenRRN3P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653390
Clinical trialRRN3P2
Miscellaneous
canSAR (ICR)RRN3P2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRRN3P2
EVEXRRN3P2
GoPubMedRRN3P2
iHOPRRN3P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:34 CEST 2017

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